Skip to content

Commit

Permalink
Fixed broken urls
Browse files Browse the repository at this point in the history
  • Loading branch information
Shettland committed Jan 14, 2025
1 parent f5652b4 commit 88cf0e2
Showing 1 changed file with 2 additions and 2 deletions.
4 changes: 2 additions & 2 deletions docs/markdown_files/relecov_tools.md
Original file line number Diff line number Diff line change
Expand Up @@ -156,10 +156,10 @@ Usage: relecov-tools read-bioinfo-metadata [OPTIONS]
-s, --software_name Name of the software employed in the bioinformatics analysis (default: viralrecon).
-o, --out_dir Path to save output file"
```
- Note: Software-specific configurations are available in [bioinfo_config.json](./relecov_tools/conf/bioinfo_config.json).
- Note: Software-specific configurations are available in [bioinfo_config.json](https://github.com/BU-ISCIII/relecov-tools/blob/main/relecov_tools/conf/bioinfo_config.json).

#### validate
`validate` commands validate the data in json format outputted by `read-metadata` command against a json schema, in this case the relecov [schema specification](./relecov_tools/schema/relecov_schema.json). It also creates a summary of the errors and warnings found in excel format as a report to the users.
`validate` commands validate the data in json format outputted by `read-metadata` command against a json schema, in this case the relecov [schema specification](https://github.com/BU-ISCIII/relecov-tools/blob/main/relecov_tools/schema/relecov_schema.json). It also creates a summary of the errors and warnings found in excel format as a report to the users.

```
$ relecov-tools validate --help
Expand Down

0 comments on commit 88cf0e2

Please sign in to comment.