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@ericcrandall
ericcrandall committed Jun 23, 2015
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4 changes: 2 additions & 2 deletions _config.yml
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#--------------------------------------------------------------------------------
# Values for this workshop - EDIT THIS SECTION.
#--------------------------------------------------------------------------------
workshop_repo : "http://github.com/swcarpentry/workshop-template"
workshop_site : "http://swcarpentry.github.io/workshop-template"
workshop_repo : "https://github.com/DIPnet/2015-08-03-IBRC-Indonesia"
workshop_site : "http://DIPnet.github.io/2015-08-03-IBRC-Indonesia"
#--------------------------------------------------------------------------------
# Standard Software Carpentry settings - should not need to be modified.
#--------------------------------------------------------------------------------
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79 changes: 43 additions & 36 deletions index.html
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---
layout: workshop
root: .
venue: FIXME # brief name of host site
address: FIXME # street address of home location
country: FIXME # country (hyphenated if need be, like 'United-Kingdom')
language: FIXME # language code like 'en' or 'fr'
latlng: FIXME # fractional latitude and longitude like 41.7901128,-87.6007318
humandate: FIXME # use the format 'Feb 17-18, 2020' (without the quotes)
humantime: FIXME # use the format '9:00 am - 4:30 pm' (without the quotes)
startdate: FIXME # use YYYY-MM-DD format like 2015-01-01
enddate: FIXME # use YYYY-MM-DD format like 2015-01-02
instructor: FIXME # list of names like ["Kay McNulty", "Betty Jennings", "Betty Snyder"]
helper: FIXME # list of names like ["Marlyn Wescoff", "Fran Bilas", "Ruth Lichterman"]
contact: FIXME # contact email address for workshop organizer
etherpad: # optional (insert the URL for your Etherpad if you're using one)
eventbrite: # optional (delete this if not used, otherwise uncomment and provide 1234567890AB key for Eventbrite registration)
venue: Indonesia Biodiversity Research Center, Bali # brief name of host site
address: Praja Hotel, Renon, Denpasar # street address of home location
country: Indonesia # country (hyphenated if need be, like 'United-Kingdom')
language: en # language code like 'en' or 'fr'
latlng: -8.671308,115.239431 # fractional latitude and longitude like 41.7901128,-87.6007318
humandate: Aug 3-4, 2015 # use the format 'Feb 17-18, 2020' (without the quotes)
humantime: 11:00 am - 4:00 pm # use the format '9:00 am - 4:30 pm' (without the quotes)
startdate: 2015-08-03 # use YYYY-MM-DD format like 2015-01-01
enddate: 2015-08-04 # use YYYY-MM-DD format like 2015-01-02
instructor: ["Eric Crandall"] # list of names like ["Kay McNulty", "Betty Jennings", "Betty Snyder"]
helper: ["John Deck","Katja Lehmann","Cynthia Riginos","Patricia Cockett"] # list of names like ["Marlyn Wescoff", "Fran Bilas", "Ruth Lichterman"]
contact: [email protected] # contact email address for workshop organizer
etherpad: https://etherpad.mozilla.org/2015-08-03-IBRC-Indonesia # optional (insert the URL for your Etherpad if you're using one)
---
<!--
HEADER
Expand Down Expand Up @@ -51,7 +50,12 @@ <h2>General Information</h2>
the pitch.
-->
<p>
<a href="{{site.swc_site}}">Software Carpentry</a>'s mission
These lessons are adapted from <a href="{{site.swc_site}}">Software
Carpentry</a>'s GitHub template for use in our DIPnet workshop. We
gratefully thank Software Carpentry and acknowledge that the DIPnet
workshop is not officially certified by them.

Software Carpentry's mission
is to help scientists and engineers get more research done in less
time and with less pain by teaching them basic lab skills for
scientific computing. This hands-on workshop will cover basic
Expand All @@ -76,7 +80,7 @@ <h2>General Information</h2>
-->
<p>
<strong>Who:</strong>
The course is aimed at graduate students and other researchers.
The course is aimed at biology faculty from Southeast Asia
</p>

<!--
Expand Down Expand Up @@ -144,9 +148,9 @@ <h2>Schedule</h2>
<div class="col-md-6">
<h3>Day 1</h3>
<table class="table table-striped">
<tr> <td>09:00</td> <td>Automating tasks with the Unix shell</td> </tr>
<tr> <td>10:30</td> <td>Coffee</td> </tr>
<tr> <td>12:00</td> <td>Lunch break</td> </tr>
<tr> <td>11:00</td> <td>Course setup and troubleshooting</td> </tr>
<tr> <td>13:00</td> <td>Automating tasks with the Unix shell</td> </tr>
<tr> <td>14:30</td> <td>Coffee</td> </tr>
<tr> <td>13:00</td> <td>Building programs with Python</td> </tr>
<tr> <td>14:30</td> <td>Coffee</td> </tr>
<tr> <td>16:00</td> <td>Wrap-up</td> </tr>
Expand All @@ -155,10 +159,10 @@ <h3>Day 1</h3>
<div class="col-md-6">
<h3>Day 2</h3>
<table class="table table-striped">
<tr> <td>09:00</td> <td>Version control with Git</td> </tr>
<tr> <td>10:30</td> <td>Coffee</td> </tr>
<tr> <td>12:00</td> <td>Lunch break</td> </tr>
<tr> <td>13:00</td> <td>Managing data with SQL</td> </tr>
<tr> <td>10:30</td> <td>Introduction to regular expressions</td> </tr>
<tr> <td>12:00</td> <td>Lunch</td> </tr>
<tr> <td>1:00</td> <td>Lunch break</td> </tr>
<tr> <td>13:00</td> <td>Introduction to R</td> </tr>
<tr> <td>14:30</td> <td>Coffee</td> </tr>
<tr> <td>16:00</td> <td>Wrap-up</td> </tr>
</table>
Expand Down Expand Up @@ -219,6 +223,7 @@ <h3>The Unix Shell</h3>
<li><a href="{{site.swc_lessons}}/ref/01-shell.html">Reference...</a></li>
</ul>
</div>
<!--
<div class="col-md-6">
<h3>Programming in Python</h3>
<ul>
Expand All @@ -232,7 +237,8 @@ <h3>Programming in Python</h3>
<li><a href="{{site.swc_lessons}}/ref/03-python.html">Reference...</a></li>
</ul>
</div>
<!--
-->

<div class="col-md-6">
<h3>Programming in R</h3>
<ul>
Expand All @@ -244,10 +250,11 @@ <h3>Programming in R</h3>
<li><a href="{{site.swc_lessons}}/ref/06-R.html">Reference...</a></li>
</ul>
</div>
-->

</div>

<div class="row">
<!--
<div class="col-md-6">
<h3>Version Control with Git</h3>
<ul>
Expand Down Expand Up @@ -277,7 +284,7 @@ <h3>Managing Data with SQL</h3>
</ul>
</div>
</div>

-->
<hr/>

<!--
Expand Down Expand Up @@ -344,7 +351,7 @@ <h4 id="shell-linux">Linux</h4>
</div>
</div>
</div> <!-- End of 'shell' section. -->

<!--
<div id='git'> <!-- Start of 'Git' section. GitHub browser compatability
is given at https://help.github.com/articles/supported-browsers/-->
<h3>Git</h3>
Expand Down Expand Up @@ -391,6 +398,7 @@ <h4 id="git-linux">Linux</h4>
</div>
</div>
</div> <!-- End of 'Git' section. -->
-->

<div id="editor"> <!-- Start of 'editor' section. -->
<h3>Text Editor</h3>
Expand All @@ -409,7 +417,7 @@ <h3>Text Editor</h3>
<div class="col-md-4">
<h4 id="editor-windows">Windows</h4>
<p>
nano is a basic editor and the default that instructors use in the workshop.
nano is a basic editor
To install it,
download the <a href="{{site.swc_installer}}">Software Carpentry Windows installer</a>
and double click on the file to run it.
Expand All @@ -427,11 +435,10 @@ <h4 id="editor-windows">Windows</h4>
<div class="col-md-4">
<h4 id="editor-macosx">Mac OS X</h4>
<p>
nano is a basic editor and the default that instructors use in the workshop.
It should be pre-installed.
nano is a basic editor that is pre-installed in Linux and Mac.
</p>
<p>
Others editors that you can use are
Text editors that you can use are
<a href="http://www.barebones.com/products/textwrangler/">Text Wrangler</a> or
<a href="http://www.sublimetext.com/">Sublime Text</a>.
</p>
Expand All @@ -451,7 +458,7 @@ <h4 id="editor-linux">Linux</h4>
</div>
</div>
</div> <!-- End of 'editor' section. -->

<!--
<div id="python"> <!-- Start of 'Python' section. Remove the third paragraph if
the workshop will teach Python using something other than
the IPython notebook.
Expand Down Expand Up @@ -547,7 +554,7 @@ <h4 id="python-linux">Linux</h4>
</div>
</div>
</div> <!-- End of 'Python' section. -->

-->
<div id="r"> <!-- Start of 'R' section. -->
<h3>R</h3>

Expand Down Expand Up @@ -592,7 +599,7 @@ <h4 id="r-linux">Linux</h4>
</div>
</div>
</div> <!-- End of 'R' section. -->

<!--
<div id="sql"> <!-- Start of 'SQLite' section. -->
<h3>SQLite</h3>

Expand Down Expand Up @@ -625,8 +632,8 @@ <h4 id="sql-linux">Linux</h4>
</div>
</div>
</div> <!-- End of 'SQLite' section. -->
-->

<!--
Uncomment this section if you are using our virtual machine.

<div id="vm">
Expand All @@ -652,4 +659,4 @@ <h3>Virtual Machine</h3>
</li>
</ol>
</div>
-->

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