Skip to content

Commit

Permalink
Added missing info in the manual test md of model configuration extra…
Browse files Browse the repository at this point in the history
…ction (#5143)
  • Loading branch information
liunelson authored Oct 11, 2024
1 parent 381539a commit edc60dd
Showing 1 changed file with 17 additions and 14 deletions.
31 changes: 17 additions & 14 deletions testing/manual/model-configuration-extracting-variables.md
Original file line number Diff line number Diff line change
Expand Up @@ -11,16 +11,17 @@ Report any issues into GitHub: [open an issue](https://github.com/DARPA-ASKEM/te
2. Create, or open, project named `QA [Your Name]`

### 2. Upload assets
1. From the manual testing [data folder](https://drive.google.com/drive/folders/14z6WAldQky0xgOAM69f6hakXhyHobYMe)
2. Add [SIR Document 1](https://drive.google.com/file/d/1ZQXSGhesif_G0bjQiB9nx0B_BJ1xV1Wx/view?usp=sharing) to your project
3. Add [SIR Document 2](https://drive.google.com/file/d/1U1h5YCBxom9k475QSOzkiIwyi5V159dV/view?usp=sharing) to your project
4. Add [SIR Model](https://drive.google.com/file/d/1F9UWuvwJPZY_XAGflsOIYy4Qrl56KS91/view?usp=sharing) to your project
5. Add [Stratified SIR model](https://drive.google.com/file/d/1r-zfKmHrOub7QT9BfdQEZabfZqveLhIq/view?usp=sharing) to your project
6. Add [SIDARTHE model](https://drive.google.com/drive/folders/14z6WAldQky0xgOAM69f6hakXhyHobYMe) to your project
7. Add [SIR timeseries Dataset 1](https://drive.google.com/file/d/1QM2TL6XrBHIlFOVSavugKAQErls7XtY8/view?usp=sharing) to your project
8. Add [SIR timeseries Dataset 2](https://drive.google.com/file/d/1zKySIpyPN_aa-icxy1e8NHmVtkZs51Fn/view?usp=sharing) to your project
9. Add [SIR contact matrix dataset](https://drive.google.com/file/d/17TByirv-LwunB0gDq46-Ww-SyJZYaHKD/view?usp=sharing) to your project
10. Wait for extractions to finish for uploaded document
1. From the manual testing [data folder](https://drive.google.com/drive/folders/14z6WAldQky0xgOAM69f6hakXhyHobYMe), add these resources to your project by clicking the `Upload` button and dragging these downloaded files onto the popup:
a. [SIR Document 1](https://drive.google.com/file/d/1ZQXSGhesif_G0bjQiB9nx0B_BJ1xV1Wx/view?usp=sharing)
b. [SIR Document 2](https://drive.google.com/file/d/1U1h5YCBxom9k475QSOzkiIwyi5V159dV/view?usp=sharing)
c. [SIR Model](https://drive.google.com/file/d/1F9UWuvwJPZY_XAGflsOIYy4Qrl56KS91/view?usp=sharing)
d. [Stratified SIR model](https://drive.google.com/file/d/1r-zfKmHrOub7QT9BfdQEZabfZqveLhIq/view?usp=sharing)
e. [SIDARTHE model](https://drive.google.com/drive/folders/14z6WAldQky0xgOAM69f6hakXhyHobYMe)
f. [SIDARTHE paper](https://drive.google.com/file/d/1pOb1MuarNEyrDf6I6z96Pdf_hQ9Q3_v0/view?usp=drive_link)
g. [SIR timeseries Dataset 1](https://drive.google.com/file/d/1QM2TL6XrBHIlFOVSavugKAQErls7XtY8/view?usp=sharing)
h. [SIR timeseries Dataset 2](https://drive.google.com/file/d/1zKySIpyPN_aa-icxy1e8NHmVtkZs51Fn/view?usp=sharing)
i. [SIR contact matrix dataset](https://drive.google.com/file/d/17TByirv-LwunB0gDq46-Ww-SyJZYaHKD/view?usp=sharing)
2. Wait a minute or two for the Document Intelligence service to finish extracting artifacts from the uploaded document.

### 3. Extracting configurations from multiple documents and timeseries datasets
1. Create a new workflow
Expand Down Expand Up @@ -75,10 +76,12 @@ Report any issues into GitHub: [open an issue](https://github.com/DARPA-ASKEM/te
### 5. The gold standard - SIDARTHE model
1. Add the SIDARTHE model to the workflow
2. Create a new "Configure model" operator
3. Attach the SIDARTHE model and SIR Document 1 to the "Configure model" operator
3. Attach `SIDARTHE model` and `SIDARTHE paper` to the "Configure model" operator
4. Extract configurations from the inputs
5. Ensure that the following configurations are extracted:
- There are 3 model configurations from the Document
- These will include phases of the covid-19 epidemic in Italy
- Initial values for S, I, D, A, R, T, H, and E should be extracted for all configurations
- There are 3 model configurations from the Document:
- `Default configuration`
- `High Transmission Scenario`
- `Restrictive NPIs Scenario`
- Initial expressions for S, I, D, A, R, T, H, and E should be extracted for all configurations
- Parameter values for alpha, beta, delta, epsilon, eta, gamma, kappa, lambda, mu, nu, rho, theta, xi, zeta, tau, and sigma should be extracted for all configurations

0 comments on commit edc60dd

Please sign in to comment.