added alignment.png to align_files folder

ContextLab · Dec 11, 2017 · aba8574 · aba8574
1 parent e57889a
commit aba8574
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Showing 13 changed files with 12 additions and 11 deletions.
diff --git a/docs/tutorials/align.rst b/docs/tutorials/align.rst
@@ -21,14 +21,16 @@ three distinct datasets. Each has a similar shape (an S), but are scaled
 and rotated differently. Aligning these datasets finds the
 transformation that minimizes the distance between them.
 
+.. image:: align_files/alignment.png
+
 Import Hypertools
 -----------------
 
 .. code:: ipython3
 
     import hypertools as hyp
     import numpy as np
-    
+
     %matplotlib inline
 
 Load your data
@@ -61,7 +63,7 @@ the weights data look when plotted together.
     # average into two groups
     group1 = np.mean(data[:17], 0)
     group2 = np.mean(data[18:], 0)
-    
+
     # plot
     geo = hyp.plot([group1[:100, :], group2[:100, :]])
 
@@ -81,11 +83,11 @@ more similar to each other.
 .. code:: ipython3
 
     aligned_data = hyp.align(data)
-    
+
     # average into two groups
     group1 = np.mean(aligned_data[:17], 0)
     group2 = np.mean(aligned_data[18:], 0)
-    
+
     # plot
     geo = hyp.plot([group1[:100, :], group2[:100, :]])
 
@@ -103,15 +105,14 @@ to 'SRM'.
 .. code:: ipython3
 
     aligned_data = hyp.align(data, align='SRM')
-    
+
     # average into two groups
     group1 = np.mean(aligned_data[:17], 0)
     group2 = np.mean(aligned_data[18:], 0)
-    
+
     # plot
     geo = hyp.plot([group1[:100, :], group2[:100, :]])
 
 
 
 .. image:: align_files/align_15_0.png
-
diff --git a/docs/tutorials/align_files/alignment.png b/docs/tutorials/align_files/alignment.png
diff --git a/docs/tutorials/cluster.rst b/docs/tutorials/cluster.rst
@@ -233,7 +233,7 @@ We can further examine the number of datapoints assigned each label.
 
 .. parsed-literal::
 
-    Counter({0: 5024, 1: 1768, 2: 1332})
+    Counter({0: 1768, 1: 5024, 2: 1332})
 
 
 

diff --git a/docs/tutorials/cluster_files/cluster_20_0.png b/docs/tutorials/cluster_files/cluster_20_0.png
diff --git a/docs/tutorials/geo.rst b/docs/tutorials/geo.rst
@@ -381,7 +381,7 @@ respectively.
 
 .. parsed-literal::
 
-    <matplotlib.axes._subplots.Axes3DSubplot at 0x117f8df98>
+    <matplotlib.axes._subplots.Axes3DSubplot at 0x10b115710>
 
 
 
@@ -413,7 +413,7 @@ First, let's plot without making any changes.
 
 .. parsed-literal::
 
-    <hypertools.datageometry.DataGeometry at 0x1184c1080>
+    <hypertools.datageometry.DataGeometry at 0x10b4d8048>
 
 
 
@@ -436,7 +436,7 @@ specified by the reduce model set to 2.
 
 .. parsed-literal::
 
-    <hypertools.datageometry.DataGeometry at 0x1184a6b70>
+    <hypertools.datageometry.DataGeometry at 0x10ba49d30>
 
 
 

diff --git a/docs/tutorials/normalize_files/normalize_13_0.png b/docs/tutorials/normalize_files/normalize_13_0.png
diff --git a/docs/tutorials/normalize_files/normalize_16_0.png b/docs/tutorials/normalize_files/normalize_16_0.png
diff --git a/docs/tutorials/normalize_files/normalize_18_0.png b/docs/tutorials/normalize_files/normalize_18_0.png
diff --git a/docs/tutorials/normalize_files/normalize_8_0.png b/docs/tutorials/normalize_files/normalize_8_0.png
diff --git a/docs/tutorials/plot_files/plot_22_0.png b/docs/tutorials/plot_files/plot_22_0.png
diff --git a/docs/tutorials/plot_files/plot_31_1.png b/docs/tutorials/plot_files/plot_31_1.png
diff --git a/docs/tutorials/plot_files/plot_37_0.png b/docs/tutorials/plot_files/plot_37_0.png
diff --git a/docs/tutorials/plot_files/plot_43_0.png b/docs/tutorials/plot_files/plot_43_0.png
Original file line number	Diff line number	Diff line change
Expand Up		@@ -233,7 +233,7 @@ We can further examine the number of datapoints assigned each label.

		.. parsed-literal::

		Counter({0: 5024, 1: 1768, 2: 1332})
		Counter({0: 1768, 1: 5024, 2: 1332})



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