-
Notifications
You must be signed in to change notification settings - Fork 161
Commit
This commit does not belong to any branch on this repository, and may belong to a fork outside of the repository.
- Loading branch information
1 parent
5263454
commit 182d56a
Showing
315 changed files
with
2,167 additions
and
718 deletions.
There are no files selected for viewing
Binary file not shown.
Binary file not shown.
Binary file not shown.
Binary file not shown.
Binary file not shown.
Binary file not shown.
Binary file not shown.
Binary file not shown.
Binary file not shown.
Binary file not shown.
Binary file not shown.
Binary file not shown.
Binary file modified
BIN
+118 Bytes
(100%)
docs/_build/doctrees/auto_examples/plot_clusters2.doctree
Binary file not shown.
Binary file modified
BIN
+104 Bytes
(100%)
docs/_build/doctrees/auto_examples/plot_dataframe.doctree
Binary file not shown.
Binary file not shown.
Binary file not shown.
Binary file not shown.
Binary file not shown.
Binary file not shown.
Binary file modified
BIN
+330 Bytes
(100%)
docs/_build/doctrees/auto_examples/plot_missing_data.doctree
Binary file not shown.
Binary file modified
BIN
+100 Bytes
(100%)
docs/_build/doctrees/auto_examples/plot_normalize.doctree
Binary file not shown.
Binary file modified
BIN
+15 Bytes
(100%)
docs/_build/doctrees/auto_examples/plot_procrustes.doctree
Binary file not shown.
Binary file not shown.
Binary file not shown.
Binary file not shown.
Binary file not shown.
Binary file not shown.
Binary file not shown.
Binary file not shown.
Binary file not shown.
Binary file not shown.
Binary file not shown.
Binary file not shown.
Binary file not shown.
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -1,4 +1,4 @@ | ||
# Sphinx build info version 1 | ||
# This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done. | ||
config: 27f69a987af6cebd72c9ce04198515dc | ||
config: 91bba5725d2ee2f6e7e8d9d4495368c7 | ||
tags: 645f666f9bcd5a90fca523b33c5a78b7 |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,54 @@ | ||
{ | ||
"nbformat_minor": 0, | ||
"nbformat": 4, | ||
"cells": [ | ||
{ | ||
"execution_count": null, | ||
"cell_type": "code", | ||
"source": [ | ||
"%matplotlib inline" | ||
], | ||
"outputs": [], | ||
"metadata": { | ||
"collapsed": false | ||
} | ||
}, | ||
{ | ||
"source": [ | ||
"\n# Animated trajectory plotted with multidimensional scaling\n\n\nThis is a trajectory of brain data, hyperaligned and then plotted in 3D\nwith multidimensional scaling.\n\n" | ||
], | ||
"cell_type": "markdown", | ||
"metadata": {} | ||
}, | ||
{ | ||
"execution_count": null, | ||
"cell_type": "code", | ||
"source": [ | ||
"# Code source: Andrew Heusser\n# License: MIT\n\nimport hypertools as hyp\nimport scipy.io as sio\nimport numpy as np\n\ndata = hyp.tools.load('weights')\naligned_w = hyp.tools.align(data)\n\nw1 = np.mean(aligned_w[:17],0)\nw2 = np.mean(aligned_w[18:],0)\n\nhyp.plot([w1, w2], animate=True, model='MDS')" | ||
], | ||
"outputs": [], | ||
"metadata": { | ||
"collapsed": false | ||
} | ||
} | ||
], | ||
"metadata": { | ||
"kernelspec": { | ||
"display_name": "Python 2", | ||
"name": "python2", | ||
"language": "python" | ||
}, | ||
"language_info": { | ||
"mimetype": "text/x-python", | ||
"nbconvert_exporter": "python", | ||
"name": "python", | ||
"file_extension": ".py", | ||
"version": "2.7.11", | ||
"pygments_lexer": "ipython2", | ||
"codemirror_mode": { | ||
"version": 2, | ||
"name": "ipython" | ||
} | ||
} | ||
} | ||
} |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,24 @@ | ||
# -*- coding: utf-8 -*- | ||
""" | ||
============================= | ||
Animated trajectory plotted with multidimensional scaling | ||
============================= | ||
This is a trajectory of brain data, hyperaligned and then plotted in 3D | ||
with multidimensional scaling. | ||
""" | ||
|
||
# Code source: Andrew Heusser | ||
# License: MIT | ||
|
||
import hypertools as hyp | ||
import scipy.io as sio | ||
import numpy as np | ||
|
||
data = hyp.tools.load('weights') | ||
aligned_w = hyp.tools.align(data) | ||
|
||
w1 = np.mean(aligned_w[:17],0) | ||
w2 = np.mean(aligned_w[18:],0) | ||
|
||
hyp.plot([w1, w2], animate=True, model='MDS') |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Binary file not shown.
Binary file not shown.
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,54 @@ | ||
{ | ||
"nbformat_minor": 0, | ||
"nbformat": 4, | ||
"cells": [ | ||
{ | ||
"execution_count": null, | ||
"cell_type": "code", | ||
"source": [ | ||
"%matplotlib inline" | ||
], | ||
"outputs": [], | ||
"metadata": { | ||
"collapsed": false | ||
} | ||
}, | ||
{ | ||
"source": [ | ||
"\n# Visualizing the digits dataset using t-SNE\n\n\nThis example loads in some data from the scikit-learn digits dataset and plots\nit using t-SNE.\n\n" | ||
], | ||
"cell_type": "markdown", | ||
"metadata": {} | ||
}, | ||
{ | ||
"execution_count": null, | ||
"cell_type": "code", | ||
"source": [ | ||
"# Code source: Andrew Heusser\n# License: MIT\n\nfrom sklearn import datasets\nimport hypertools as hyp\n\ndigits = datasets.load_digits(n_class=6)\ndata = digits.data\ngroup = digits.target.astype('str')\n\nhyp.plot(data, '.', model='TSNE', group=group, ndims=2)" | ||
], | ||
"outputs": [], | ||
"metadata": { | ||
"collapsed": false | ||
} | ||
} | ||
], | ||
"metadata": { | ||
"kernelspec": { | ||
"display_name": "Python 2", | ||
"name": "python2", | ||
"language": "python" | ||
}, | ||
"language_info": { | ||
"mimetype": "text/x-python", | ||
"nbconvert_exporter": "python", | ||
"name": "python", | ||
"file_extension": ".py", | ||
"version": "2.7.11", | ||
"pygments_lexer": "ipython2", | ||
"codemirror_mode": { | ||
"version": 2, | ||
"name": "ipython" | ||
} | ||
} | ||
} | ||
} |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,21 @@ | ||
# -*- coding: utf-8 -*- | ||
""" | ||
============================= | ||
Visualizing the digits dataset using t-SNE | ||
============================= | ||
This example loads in some data from the scikit-learn digits dataset and plots | ||
it using t-SNE. | ||
""" | ||
|
||
# Code source: Andrew Heusser | ||
# License: MIT | ||
|
||
from sklearn import datasets | ||
import hypertools as hyp | ||
|
||
digits = datasets.load_digits(n_class=6) | ||
data = digits.data | ||
group = digits.target.astype('str') | ||
|
||
hyp.plot(data, '.', model='TSNE', group=group, ndims=2) |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Oops, something went wrong.