Add new test from dismo to check maxent

ConsBiol-unibern · Nov 19, 2020 · f21451f · f21451f
1 parent e9966f8
commit f21451f
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Showing 12 changed files with 12 additions and 12 deletions.
diff --git a/R/SDMmodel2MaxEnt.R b/R/SDMmodel2MaxEnt.R
@@ -27,7 +27,7 @@
 #' # Train a Maxent model
 #' # The next line checks if Maxent is correctly configured but you don't need
 #' # to run it in your script
-#' if (checkMaxentInstallation(verbose = FALSE)) {
+#' if (dismo::maxent(silent = TRUE)) {
 #' model <- train(method = "Maxent", data = data, fc = "l")
 #'
 #' dismo_model <- SDMmodel2MaxEnt(model)

diff --git a/R/maxentTh.R b/R/maxentTh.R
@@ -29,7 +29,7 @@
 #' # Train a Maxent model
 #' # The next line checks if Maxent is correctly configured but you don't need
 #' # to run it in your script
-#' if (checkMaxentInstallation(verbose = FALSE)) {
+#' if (dismo::maxent(silent = TRUE)) {
 #' model <- train(method = "Maxent", data = data, fc = "l")
 #' maxentTh(model)
 #' }

diff --git a/R/maxentVarImp.R b/R/maxentVarImp.R
@@ -34,7 +34,7 @@
 #' # Train a Maxent model
 #' # The next line checks if Maxent is correctly configured but you don't need
 #' # to run it in your script
-#' if (checkMaxentInstallation(verbose = FALSE)) {
+#' if (dismo::maxent(silent = TRUE)) {
 #' model <- train(method = "Maxent", data = data, fc = "l")
 #' maxentVarImp(model)
 #' }

diff --git a/R/reduceVar.R b/R/reduceVar.R
@@ -72,7 +72,7 @@
 #' # Train a Maxent model
 #' # The next line checks if Maxent is correctly configured but you don't need
 #' # to run it in your script
-#' if (checkMaxentInstallation(verbose = FALSE)) {
+#' if (dismo::maxent(silent = TRUE)) {
 #' model <- train(method = "Maxent", data = train, fc = "lq")
 #'
 #' # Remove all variables with percent contribution lower than 2%

diff --git a/R/train.R b/R/train.R
@@ -113,7 +113,7 @@
 #' ## Train a Maxent model
 #' # The next line checks if Maxent is correctly configured but you don't need
 #' # to run it in your script
-#' if (checkMaxentInstallation(verbose = FALSE)) {
+#' if (dismo::maxent(silent = TRUE)) {
 #' model <- train(method = "Maxent", data = data, fc = "l", reg = 1.5,
 #'                iter = 700)
 #'

diff --git a/R/varSel.R b/R/varSel.R
@@ -81,7 +81,7 @@
 #' # Train a model
 #' # The next line checks if Maxent is correctly configured but you don't need
 #' # to run it in your script
-#' if (checkMaxentInstallation(verbose = FALSE)) {
+#' if (dismo::maxent(silent = TRUE)) {
 #' model <- train(method = "Maxent", data = train, fc = "l")
 #' vs <- varSel(model, metric = "tss", bg4cor = bg, test = test, cor_th = 0.7,
 #'              use_pc = TRUE)

diff --git a/man/SDMmodel2MaxEnt.Rd b/man/SDMmodel2MaxEnt.Rd
diff --git a/man/maxentTh.Rd b/man/maxentTh.Rd
diff --git a/man/maxentVarImp.Rd b/man/maxentVarImp.Rd
diff --git a/man/reduceVar.Rd b/man/reduceVar.Rd
diff --git a/man/train.Rd b/man/train.Rd
diff --git a/man/varSel.Rd b/man/varSel.Rd