GitHub - ChaoTang-SCU/UCB

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Name	Name	Last commit message	Last commit date
Latest commit tangchao7498 Add Aug 24, 2018 e0fa250 · Aug 24, 2018 History 5 Commits
novel_splice_junction	novel_splice_junction	Add	Aug 24, 2018
.DS_Store	.DS_Store	Add	Aug 24, 2018
.Rapp.history	.Rapp.history	Add	May 1, 2018
1bp_alternative_splicing_distance.R	1bp_alternative_splicing_distance.R	Add	May 1, 2018
A3:5SS_Parse_and_AFE:ALE_finding.R	A3:5SS_Parse_and_AFE:ALE_finding.R	Creat UCB repository	Mar 10, 2018
AS gene GO analysis illustration	AS gene GO analysis illustration	Add	May 1, 2018
AS_Cell_Type_Fisher.test.R	AS_Cell_Type_Fisher.test.R	Add	Aug 24, 2018
AS_GO.R	AS_GO.R	Add	Aug 24, 2018
AS_GO_plot.R	AS_GO_plot.R	Add	May 1, 2018
AS_GO_plot_in_one_cell.R	AS_GO_plot_in_one_cell.R	Add	May 1, 2018
AS_GO_plot_of_SJ_host_gene.R	AS_GO_plot_of_SJ_host_gene.R	Add	May 1, 2018
AS_Sorting_out.R	AS_Sorting_out.R	Add	Aug 24, 2018
AS_gene_GO_background_random_selection.R	AS_gene_GO_background_random_selection.R	Add	May 1, 2018
AS_genetype_and_GO_enrichment(cell_by_cell).R	AS_genetype_and_GO_enrichment(cell_by_cell).R	Add	Mar 19, 2018
AS_genetype_and_GO_enrichment.R	AS_genetype_and_GO_enrichment.R	Creat UCB repository	Mar 10, 2018
All_PSI_Seurat.R	All_PSI_Seurat.R	Add	Aug 24, 2018
All_Unannotated_SJ_Seurat.R	All_Unannotated_SJ_Seurat.R	Add	Aug 24, 2018
BCSeq_Combat_test.R	BCSeq_Combat_test.R	Add	Aug 24, 2018
BCSeq_test.R	BCSeq_test.R	Add	Aug 24, 2018
BCSeq_test2.R	BCSeq_test2.R	Add	Aug 24, 2018
BPSC_test.R	BPSC_test.R	Add	Aug 24, 2018
CD45_Salmon_Vs_Stringtie.R	CD45_Salmon_Vs_Stringtie.R	Add	Aug 24, 2018
CD45_Stat.R	CD45_Stat.R	Add	Aug 24, 2018
CD45_Stat2.R	CD45_Stat2.R	Add	Aug 24, 2018
CD45_Stat3.R	CD45_Stat3.R	Add	Aug 24, 2018
CD45_Stat_TPM.R	CD45_Stat_TPM.R	Add	Aug 24, 2018
CD45_V2.R	CD45_V2.R	Add	May 1, 2018
CD45_V3.sh	CD45_V3.sh	Add	Aug 24, 2018
CD45_V4.R	CD45_V4.R	Add	May 1, 2018
CD45_V5.sh	CD45_V5.sh	Add	Aug 24, 2018
CD45_V6.R	CD45_V6.R	Add	Aug 24, 2018
CD45_plot.R	CD45_plot.R	Add	May 1, 2018
CD48_B_Sep_AS_vioplot.R	CD48_B_Sep_AS_vioplot.R	Add	Aug 24, 2018
CD4_Seurat.R	CD4_Seurat.R	Add	Aug 24, 2018
CD8_Seurat.R	CD8_Seurat.R	Add	Aug 24, 2018
Calculate_psi_of_all_junction.R	Calculate_psi_of_all_junction.R	Add	May 1, 2018
Cell_type_specific_gene_funtion_enrichment.R	Cell_type_specific_gene_funtion_enrichment.R	Add	Aug 24, 2018
Cell_type_specificc_PSI_Seurat.R	Cell_type_specificc_PSI_Seurat.R	Add	Aug 24, 2018
DSU_New_Version.R	DSU_New_Version.R	Add	Aug 24, 2018
DSU_V2.R	DSU_V2.R	Add	Aug 24, 2018
DSU_cell_by_cell.R	DSU_cell_by_cell.R	Add	Mar 19, 2018
DSU_for_SE_A3-5SS_(10reads).R	DSU_for_SE_A3-5SS_(10reads).R	Creat UCB repository	Mar 10, 2018
DSU_for_SE_A3:5SS_(10reads_2cells).R	DSU_for_SE_A3:5SS_(10reads_2cells).R	Creat UCB repository	Mar 10, 2018
DSU_for_SE_A3:5SS_MXE.R	DSU_for_SE_A3:5SS_MXE.R	Creat UCB repository	Mar 10, 2018
EGA_CD45_Salmon.sh	EGA_CD45_Salmon.sh	Add	Aug 24, 2018
EGA_Salmon_Stat.R	EGA_Salmon_Stat.R	Add	Aug 24, 2018
Exon_expression.Rscript.R	Exon_expression.Rscript.R	Add	May 1, 2018
FASTA of cell type specific novel SJ.R	FASTA of cell type specific novel SJ.R	Add	May 1, 2018
Hypergeometric for cell type specific AS events-R.R	Hypergeometric for cell type specific AS events-R.R	Add	Aug 24, 2018
Hypergeometric for cell type specific SJ.R	Hypergeometric for cell type specific SJ.R	Add	May 1, 2018
Hypergeometric for cell type specific intron-centric PSI.R	Hypergeometric for cell type specific intron-centric PSI.R	Add	May 1, 2018
IR_SJintron_result_merge.R	IR_SJintron_result_merge.R	Add	Mar 19, 2018
IR_SJintron_result_merge_and_cutoff.R	IR_SJintron_result_merge_and_cutoff.R	Add	Mar 19, 2018
IR_SJintron_result_merge_and_cutoff_ update_ID.R	IR_SJintron_result_merge_and_cutoff_ update_ID.R	Add	Mar 19, 2018
IR_find_and_GTF_merge.R	IR_find_and_GTF_merge.R	Creat UCB repository	Mar 10, 2018
IR_find_bedtools_and_R_script.sh	IR_find_bedtools_and_R_script.sh	Creat UCB repository	Mar 10, 2018
Jurkat_RNASeq_Download_and_fastqdump	Jurkat_RNASeq_Download_and_fastqdump	Add	Aug 24, 2018
Merge_IR_with_known_intron_ranges_and_GTF.R	Merge_IR_with_known_intron_ranges_and_GTF.R	Add	Mar 19, 2018
Novel_SJ_sorting_out.R	Novel_SJ_sorting_out.R	Add	Aug 24, 2018
Novel_splicing_junction_only_in one_cell.R	Novel_splicing_junction_only_in one_cell.R	Add	Aug 24, 2018
PCA_And_Rtsne_test.R	PCA_And_Rtsne_test.R	Add	Aug 24, 2018
PSI_VS_Salmon_Stringtie_RTPCR.R	PSI_VS_Salmon_Stringtie_RTPCR.R	Add	Aug 24, 2018
RegulatoryFeatureActivity.R	RegulatoryFeatureActivity.R	Add	Aug 24, 2018
SER_Domain_enrichment.R	SER_Domain_enrichment.R	Add	Aug 24, 2018
SE_Only_in_OneCell.R	SE_Only_in_OneCell.R	Add	Aug 24, 2018
SJ_files_merge_ID_convert_and_filtering_use_BGI_used_cells.sh	SJ_files_merge_ID_convert_and_filtering_use_BGI_used_cells.sh	Creat UCB repository	Mar 10, 2018
SJ_merge_and_filter(10cells).R	SJ_merge_and_filter(10cells).R	Creat UCB repository	Mar 10, 2018
SJ_merge_and_filter(all_reads_more_than_10).R	SJ_merge_and_filter(all_reads_more_than_10).R	Creat UCB repository	Mar 10, 2018
Tcel_Sep_PSI_Seurat.R	Tcel_Sep_PSI_Seurat.R	Add	Aug 24, 2018
Tcell_Spe_PSI_Seurat.R	Tcell_Spe_PSI_Seurat.R	Add	Aug 24, 2018
The relationship between gene expression and GC content.R	The relationship between gene expression and GC content.R	Add	Aug 24, 2018
after_experiment_validate.R	after_experiment_validate.R	Add	Aug 24, 2018
bedtools_and_rscripts_call_IR.sh	bedtools_and_rscripts_call_IR.sh	Add	Mar 19, 2018
experiment_validate_sashimi.R	experiment_validate_sashimi.R	Add	Aug 24, 2018
filtering_sj3_for_DSU.R	filtering_sj3_for_DSU.R	Creat UCB repository	Mar 10, 2018
find_intron_range_from_GTF.R	find_intron_range_from_GTF.R	Add	Mar 19, 2018
generate_GTF_for_ggsashimiplot.R	generate_GTF_for_ggsashimiplot.R	Add	May 1, 2018
heatmap_use_satija_genes.R	heatmap_use_satija_genes.R	Add	May 1, 2018
investigate_the_alternative_of CD45.R	investigate_the_alternative_of CD45.R	Add	May 1, 2018
novel_sj_reads_Seurat.R	novel_sj_reads_Seurat.R	Add	Aug 24, 2018
sQTL_test.R	sQTL_test.R	Add	May 1, 2018
test_AS_events_by_PSI_R:L.R	test_AS_events_by_PSI_R:L.R	Creat UCB repository	Mar 10, 2018
test_overlap_of_1cell_2cell_of_10reads.R	test_overlap_of_1cell_2cell_of_10reads.R	Creat UCB repository	Mar 10, 2018