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@CNAG-Biomedical-Informatics

CNAG Biomedical Informatics

README.md

Welcome to CNAG Biomedical Informatics!

We are a subdivision of the Biomedical Genomics Group at CNAG. Our research focuses on the development of tools for handling phenotypic data.

Mainly using Perl, Python, JavaScript (React) and R.

Tools

Convert-Pheno Convert-Pheno

A software toolkit for the interconversion of standard data models for phenotypic data

Published open access: Access the article by clicking here.
Playground Uptime Robot status
Documentation Perl Module Documentation Status
Documentation Web-UI Documentation Status
Code Repository Perl Module CPAN Publish
Code Repository Web-UI Docker build server & client

Pheno-Ranker

Advancing Semantic Similarity Analysis of Phenotypic Data Stored in GA4GH Standards and Beyond

Manuscript in preparation.
Playground In Development
Documentation Perl Module Documentation Status
Documentation Web-UI In Development
Code Repository Perl Module CPAN Publish
Code Repository Web-UI Docker build server & client

Pinned

  1. convert-pheno convert-pheno Public

    A software toolkit for the interconversion of standard data models for phenotypic data

    Perl 9 1

  2. convert-pheno-ui convert-pheno-ui Public

    The web UI for Convert-Pheno, a software toolkit for the interconversion of standard data models for phenotypic data

    FreeMarker 4 1

  3. pheno-ranker pheno-ranker Public

    Pheno-Ranker is a tool designed for performing semantic similarity analysis on phenotypic data structured in JSON format, such as Beacon v2 Models or Phenopackets v2.

    Perl 4 1

  4. pheno-ranker-ui pheno-ranker-ui Public

    The web ui (R-Shiny application) for Pheno-Ranker, a tool designed for performing semantic similarity analysis on phenotypic data structured in JSON format, such as Beacon v2 Models or Phenopackets v2

    R 1

Repositories

Showing 7 of 7 repositories
  • convert-pheno Public

    A software toolkit for the interconversion of standard data models for phenotypic data

    CNAG-Biomedical-Informatics/convert-pheno’s past year of commit activity
    Perl 9 Artistic-2.0 1 1 0 Updated Jun 19, 2024
  • pheno-ranker-ui Public

    The web ui (R-Shiny application) for Pheno-Ranker, a tool designed for performing semantic similarity analysis on phenotypic data structured in JSON format, such as Beacon v2 Models or Phenopackets v2

    CNAG-Biomedical-Informatics/pheno-ranker-ui’s past year of commit activity
    R 1 GPL-3.0 0 0 25 Updated Jun 18, 2024
  • convert-pheno-ui Public

    The web UI for Convert-Pheno, a software toolkit for the interconversion of standard data models for phenotypic data

    CNAG-Biomedical-Informatics/convert-pheno-ui’s past year of commit activity
    FreeMarker 4 GPL-3.0 1 2 25 Updated Jun 13, 2024
  • pheno-ranker Public

    Pheno-Ranker is a tool designed for performing semantic similarity analysis on phenotypic data structured in JSON format, such as Beacon v2 Models or Phenopackets v2.

    CNAG-Biomedical-Informatics/pheno-ranker’s past year of commit activity
    Perl 4 Artistic-2.0 1 0 0 Updated Jun 7, 2024
  • omop-cdm-2-beacon-v2 Public
    CNAG-Biomedical-Informatics/omop-cdm-2-beacon-v2’s past year of commit activity
    0 0 0 0 Updated Jun 3, 2024
  • .github Public

    Repository for modifying the organization's profile page

    CNAG-Biomedical-Informatics/.github’s past year of commit activity
    Makefile 0 0 0 0 Updated May 6, 2024
  • bioconda-recipes Public Forked from bioconda/bioconda-recipes

    Conda recipes for the bioconda channel.

    CNAG-Biomedical-Informatics/bioconda-recipes’s past year of commit activity
    Shell 0 MIT 3,116 0 0 Updated Sep 17, 2023

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