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@CDPHE-bioinformatics

Colorado Department of Public Health and Environment Bioinformatics

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  1. CDPHE-SARS-CoV-2 CDPHE-SARS-CoV-2 Public

    Workflows and scripts for the assembly and analysis of SARS-CoV-2 whole genome tiled amplicon sequencing.

    WDL 5

  2. CDPHE-influenza CDPHE-influenza Public

    Workflows and scripts for the assembly and analysis of influenza whole genome amplicon sequencing.

    WDL 2 1

  3. CDPHE-RSV CDPHE-RSV Public

    Workflows and scripts for the assembly and analysis of RSV whole genome tiled amplicon sequencing.

    WDL 1

  4. CDPHE-docker-builds CDPHE-docker-builds Public

    Docker builds for CDPHE pipelines and workflows.

    Python

  5. CDPHE-publications CDPHE-publications Public

    Repository of code used in CDPHE publications.

    Python

  6. utils_workflows utils_workflows Public

    Useful workflows and tasks for CDPHE pipelines.

    WDL

Repositories

Showing 9 of 9 repositories
  • CDPHE-Enterovirus Public

    Workflows and scripts for the assembly and analysis of enterovirus whole genome sequencing.

    CDPHE-bioinformatics/CDPHE-Enterovirus’s past year of commit activity
    WDL 0 GPL-3.0 0 0 0 Updated Jun 19, 2024
  • CDPHE-RSV Public

    Workflows and scripts for the assembly and analysis of RSV whole genome tiled amplicon sequencing.

    CDPHE-bioinformatics/CDPHE-RSV’s past year of commit activity
    WDL 1 GPL-3.0 0 3 1 Updated Jun 14, 2024
  • CDPHE-influenza Public

    Workflows and scripts for the assembly and analysis of influenza whole genome amplicon sequencing.

    CDPHE-bioinformatics/CDPHE-influenza’s past year of commit activity
    WDL 2 GPL-3.0 1 4 1 Updated Jun 7, 2024
  • .github Public

    issue templates

    CDPHE-bioinformatics/.github’s past year of commit activity
    0 0 0 0 Updated May 14, 2024
  • CDPHE-SARS-CoV-2 Public

    Workflows and scripts for the assembly and analysis of SARS-CoV-2 whole genome tiled amplicon sequencing.

    CDPHE-bioinformatics/CDPHE-SARS-CoV-2’s past year of commit activity
    WDL 5 GPL-3.0 0 10 0 Updated May 2, 2024
  • CDPHE-mpox Public

    Workflows and scripts for the assembly and analysis of mpox whole genome sequencing.

    CDPHE-bioinformatics/CDPHE-mpox’s past year of commit activity
    WDL 0 0 0 0 Updated Apr 11, 2024
  • CDPHE-docker-builds Public

    Docker builds for CDPHE pipelines and workflows.

    CDPHE-bioinformatics/CDPHE-docker-builds’s past year of commit activity
    Python 0 GPL-3.0 0 0 0 Updated Dec 8, 2023
  • utils_workflows Public

    Useful workflows and tasks for CDPHE pipelines.

    CDPHE-bioinformatics/utils_workflows’s past year of commit activity
    WDL 0 0 0 0 Updated Jun 14, 2023
  • CDPHE-publications Public

    Repository of code used in CDPHE publications.

    CDPHE-bioinformatics/CDPHE-publications’s past year of commit activity
    Python 0 GPL-3.0 0 0 0 Updated Jun 9, 2023

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