Skip to content
@Bitbol-Lab

Bitbol-Lab

Popular repositories Loading

  1. ProtMamba-ssm ProtMamba-ssm Public

    ProtMamba: a homology-aware but alignment-free protein state space model

    Jupyter Notebook 40 5

  2. Iterative_masking Iterative_masking Public

    Iterative masking algorithm on MSA Transformer to generate synthetic sequences

    Jupyter Notebook 19 7

  3. Phylogeny-MSA-Transformer Phylogeny-MSA-Transformer Public

    Supporting repository for "Protein language models trained on multiple sequence alignments learn phylogenetic relationships" (https://www.nature.com/articles/s41467-022-34032-y)

    Jupyter Notebook 15 2

  4. DiffPALM DiffPALM Public

    Differentiable Pairing using Alignment-based Language Models

    Jupyter Notebook 13 2

  5. Phylogeny-Partners Phylogeny-Partners Public

    Jupyter Notebook 1

  6. DiffPaSS DiffPaSS Public

    Differentiable Pairing using Soft Scores

    Jupyter Notebook 1 1

Repositories

Showing 10 of 17 repositories
  • ProtMamba-ssm Public

    ProtMamba: a homology-aware but alignment-free protein state space model

    Bitbol-Lab/ProtMamba-ssm’s past year of commit activity
    Jupyter Notebook 40 Apache-2.0 5 0 0 Updated Jun 2, 2024
  • ProtMamba-frozen-nips Public
    Bitbol-Lab/ProtMamba-frozen-nips’s past year of commit activity
    Python 0 Apache-2.0 0 0 0 Updated May 22, 2024
  • DiffPaSS Public

    Differentiable Pairing using Soft Scores

    Bitbol-Lab/DiffPaSS’s past year of commit activity
    Jupyter Notebook 1 Apache-2.0 1 2 0 Updated May 20, 2024
  • Phylogeny-sector-inference Public
    Bitbol-Lab/Phylogeny-sector-inference’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Apr 19, 2024
  • Structured_pop Public

    This repository provides the python code used to generate Figures in articles "Frequent asymmetric migrations suppress natural selection in spatially structured populations" , and "Mutant fate in spatially structured populations on graphs: connecting models to experiments" by A. Abbara, L. Pagani, C. García-Pareja, and A.-F. Bitbol.

    Bitbol-Lab/Structured_pop’s past year of commit activity
    Jupyter Notebook 0 MIT 1 0 0 Updated Feb 6, 2024
  • Iterative_masking Public

    Iterative masking algorithm on MSA Transformer to generate synthetic sequences

    Bitbol-Lab/Iterative_masking’s past year of commit activity
    Jupyter Notebook 19 Apache-2.0 7 0 0 Updated Jan 17, 2024
  • Cooperation_structured_pop Public
    Bitbol-Lab/Cooperation_structured_pop’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Jan 16, 2024
  • DiffPALM Public

    Differentiable Pairing using Alignment-based Language Models

    Bitbol-Lab/DiffPALM’s past year of commit activity
    Jupyter Notebook 13 Apache-2.0 2 2 0 Updated Jan 5, 2024
  • alphafold Public Forked from google-deepmind/alphafold

    Open source code for AlphaFold.

    Bitbol-Lab/alphafold’s past year of commit activity
    Python 0 Apache-2.0 2,163 0 0 Updated Dec 19, 2023
  • T4P-T6SS-interplay Public
    Bitbol-Lab/T4P-T6SS-interplay’s past year of commit activity
    Python 0 Apache-2.0 0 0 0 Updated Nov 1, 2023
View all repositories

People

This organization has no public members. You must be a member to see who’s a part of this organization.

Top languages

Loading…

Most used topics

Loading…