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Detecting fusion transcripts in long read or paired-end short read

questionFurther information is requestedFurther information is requested

Status: Open.

#93 In BirolLab/RNA-Bloom;

· cprovido opened on Dec 2, 2025

Support lower-case read sequences

enhancementNew feature or requestNew feature or request

Status: Open.

#91 In BirolLab/RNA-Bloom;

· kmnip opened on Apr 6, 2025

Matching read IDs for each transcript

questionFurther information is requestedFurther information is requested

Status: Open.

#86 In BirolLab/RNA-Bloom;

· andyjslee opened on Mar 12, 2025

ERROR: Index 1 out of bounds for length 1

questionFurther information is requestedFurther information is requested

Status: Open.

#85 In BirolLab/RNA-Bloom;

· berath opened on Mar 8, 2025

Issue with "-mergepool" option

questionFurther information is requestedFurther information is requested

Status: Open.

#83 In BirolLab/RNA-Bloom;

· mgabriel01 opened on Jan 20, 2025

Improve hairpin/palindrome removal in long-read assembly

enhancementNew feature or requestNew feature or request

Status: Open.

#55 In BirolLab/RNA-Bloom;

· kmnip opened on Aug 15, 2023

Output error message for pooled assembly of single-end reads

bugSomething isn't workingSomething isn't working

Status: Open.

#54 In BirolLab/RNA-Bloom;

· kmnip opened on Aug 9, 2023

questions about how to get genes from the output

enhancementNew feature or requestNew feature or request

questionFurther information is requestedFurther information is requested

Status: Open.

#53 In BirolLab/RNA-Bloom;

· alexyfyf opened on Aug 2, 2023

Feature request: long-read reference-guided assembly

enhancementNew feature or requestNew feature or request

Status: Open.

#51 In BirolLab/RNA-Bloom;

· oneillkza opened on Nov 3, 2022