Bioinformatic Tools for sequence analysis
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PANGEA-plus
PANGEA-plus PublicA new implementation of PANGEA pipeline for metagenomics with multiple classification methods and consensus analysis
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merge_fastq_files.pl
merge_fastq_files.pl PublicA simple Perl script made for merging reads and barcodes generated by Illumina sequencing in fastq format.
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ncbitc_functions
ncbitc_functions PublicForked from mvneves/ncbitaxcollector
A tool for searching NCBI taxonomy information.
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MPI-blastn
MPI-blastn PublicA high performance parallel version of nucleotide BLAST+ for sequence search
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MPI-blastp
MPI-blastp PublicHigh performance tool for running protein sequence search based on BLAST+ (2.2.26). Shared (OpenMP) and distributed (MPI) memory optimizations.
C 1
Repositories
- merge_abundances Public
- classify_blast_results_from_PFAM_database Public
This R script is made to convert the PFAM IDs from Blast result tables to interpretable descriptions and molecular function names of proteins
- merge_fastq_files.pl Public
A simple Perl script made for merging reads and barcodes generated by Illumina sequencing in fastq format.
- SILVA-taxcollector Public
A tool for converting blast results to taxonomic information, useful for generating OTU tables. This version supports blast results acquired using SILVA 16S/18S database.
- trim_phylip_alignment Public
A simple script for trimming multiple sequence alignments in phylip format
- NCBI-taxcollector Public
- PANGEA-plus Public
A new implementation of PANGEA pipeline for metagenomics with multiple classification methods and consensus analysis
- MPI-blastp Public
High performance tool for running protein sequence search based on BLAST+ (2.2.26). Shared (OpenMP) and distributed (MPI) memory optimizations.
- ncbitc_functions Public Forked from mvneves/ncbitaxcollector
A tool for searching NCBI taxonomy information.
