Andersen Lab
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- United States of America
- http://www.andersenlab.org
- erik.andersen@jhu.edu
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- Ce_geneAnno-sh Public
This repository contains the scripts used to assess the presence/absence of Caenorhabditis elegans ref genome genes across all wild strains. Genes are classified as "core", "soft-core", "rare", or "private" based on the frequency at which they occur in wild strains.
AndersenLab/Ce_geneAnno-sh’s past year of commit activity - variantanno-sh Public
Shells scripts to run tools (SIFT, VEP, ANNOVAR) to annotate variants in selfing Caenorhabditis WI VCFs
AndersenLab/variantanno-sh’s past year of commit activity - noaa-nf Public
AndersenLab/noaa-nf’s past year of commit activity - variation_orthology_vis Public
Josh Bauman rotation spring 2025 - wrote bash scripts to filter GATK and PAV VCFs, R scripts for visualizing this variation, and worked on validating BRAKER gene model calls between N2 and WS using BLASTP
AndersenLab/variation_orthology_vis’s past year of commit activity - finemap_qtl_overlap Public
Simple NF workflow to finemmap the same genomic regions for a pair of traits
AndersenLab/finemap_qtl_overlap’s past year of commit activity
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