Independent researcher and mathematician, working on protein language models, certain equivariant transformers, Low Rank Adaptations, and QLoRA
Pinned Loading
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protein_mutation_scoring
protein_mutation_scoring PublicSome scoring functions for predicting the effects of mutations on protein sequences using ESM-2
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transformers_proteins_and_persistent_homology
transformers_proteins_and_persistent_homology PublicTransformers, Protein Sequences, and Persistent Homology
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esm2_LoRA_binding_sites
esm2_LoRA_binding_sites PublicTraining a Low Rank Adaptation of the protein language model ESM-2 for RNA binding site predictor
Python 6
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anomaly_detection_persistent_homology
anomaly_detection_persistent_homology PublicDetecting anomalous texts with persistent homology of context vectors computed by individual attention heads in language transformers
Jupyter Notebook 1
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esm2_masked_lm
esm2_masked_lm PublicVarious Ideas for Protein Masked LM with ESMFold/ESM-2
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hebrew_context_persistent_homology
hebrew_context_persistent_homology PublicPersistent homology of context vectors computed by individual attention heads in Hebrew language models
Jupyter Notebook
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