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AmayaGS/README.md

Hiya 👋 I'm Amaya 🦖

I work at the intersection of 💻 AI, 🌱 biology and 💊 medicine!

I live and work in hope AI research will help us understand the complex, wonderful world of biology, immunology and pathogenesis ✨ 💫

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  1. BioX-CPath BioX-CPath Public

    A biologically interpretable graph neural network for multistain computational pathology - CVPR 2025

    Python 8

  2. aaronwtr/PertEval aaronwtr/PertEval Public

    Evaluation suite for transcriptomic perturbation effect prediction models. Includes support for single-cell foundation models.

    Python 22 2

  3. ImmunoHistoBench ImmunoHistoBench Public

    A benchmark of histopathology Foundation Models on multi-stain Immunohistochemistry immune datasets AIM-FM workshop @ NeurIPS 24

    Python 7

  4. MUSTANG MUSTANG Public

    Multi-stain graph self attention multiple instance learning for histopathology Whole Slide Images - BMVC 2023

    Python 13 2

  5. WSI_Multiple_Instance_Learning WSI_Multiple_Instance_Learning Public

    A repo for Multiple Instance Learning applied to Whole Slide Images

    Python 5 2

  6. WSI_Segmentation WSI_Segmentation Public

    Automated segmentation of H&E and Immunohistochemistry stained synovial tissue in histopathology Whole Slide Images - MIUA 2023

    Python 3