Allen Institute for Neural Dynamics
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aind-data-schema
aind-data-schema PublicA library that defines AIND data schema and validates JSON.
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aind-ephys-spikesort-kilosort25-full
aind-ephys-spikesort-kilosort25-full PublicCodeOcean capsule for full electrophysiology analysis pipeline using Kilosort2.5 via SpikeInterface.
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aind-ephys-pipeline
aind-ephys-pipeline PublicAIND pipeline for processing extracellular electrophysiology data
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segmentation-skeleton-metrics
segmentation-skeleton-metrics PublicA Python package for evaluating a predicted segmentation of neural arbors by computing skeleton-based metrics.
Python 6
Repositories
- exaspim-control Public
AllenNeuralDynamics/exaspim-control’s past year of commit activity - aind-smartspim-classification Public
Code for classifying the cell candidate outputs from aind-smartspim-segmentation within smartspim pipeline
AllenNeuralDynamics/aind-smartspim-classification’s past year of commit activity - dynamicrouting-processing-template Public template
Template for capsules that process one or all NWB files in an attached "datacube" asset
AllenNeuralDynamics/dynamicrouting-processing-template’s past year of commit activity - supervoxel-loss Public
Efficient connectivity-preserving loss function for training neural networks to perform instance segmentation.
AllenNeuralDynamics/supervoxel-loss’s past year of commit activity - aind-dynamic-foraging-data-utils Public
Tools for the analysis of behavior and neural data from the dynamic foraging task
AllenNeuralDynamics/aind-dynamic-foraging-data-utils’s past year of commit activity
