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Update link to consensus reference #126

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merged 2 commits into from
Feb 19, 2025

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allyhawkins
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Closes #125

Here I am updating the link to the consensus cell type reference since we made a change to it in AlexsLemonade/OpenScPCA-analysis#1037. I decided to just use the permalink with a hash rather than a tagged version of the file, since we are blocked by AlexsLemonade/OpenScPCA-analysis#1040 before we can create a new release of OpenScPCA-analysis.

I want to be able to update this and then re-run for staging and production so that we ensure the results in the workflow bucket are correct. Are we okay with this approach?

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I am fine with this approach, but can you file an issue to update these back to tags when there is a new release of openscpca?

@@ -10,4 +10,4 @@ This module also uses the following reference files found in the `OpenScPCA-anal

- `blueprint-mapped-ontologies.tsv` : <https://github.com/AlexsLemonade/OpenScPCA-analysis/blob/e4ffb305a87a54133f398c4445ff92348fcb9d8a/analyses/cell-type-consensus/references/blueprint-mapped-ontologies.tsv>
- `panglao-cell-type-ontologies.tsv`: <https://github.com/AlexsLemonade/OpenScPCA-analysis/blob/b870a082bc9acd3536c5f8d2d52550d8fe8a4239/analyses/cell-type-consensus/references/panglao-cell-type-ontologies.tsv>
- `consensus-cell-type-reference.tsv`: <https://github.com/AlexsLemonade/OpenScPCA-analysis/blob/e4ffb305a87a54133f398c4445ff92348fcb9d8a/analyses/cell-type-consensus/references/consensus-cell-type-reference.tsv>
- `consensus-cell-type-reference.tsv`: <https://raw.githubusercontent.com/AlexsLemonade/OpenScPCA-analysis/e4dc422dd8ddcdc89d031c289fbd123748db500c/analyses/cell-type-consensus/references/consensus-cell-type-reference.tsv>
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Since this is a readme, let's keep the link to the main page (and maybe update the rest of these to matching tag urls?)

Suggested change
- `consensus-cell-type-reference.tsv`: <https://raw.githubusercontent.com/AlexsLemonade/OpenScPCA-analysis/e4dc422dd8ddcdc89d031c289fbd123748db500c/analyses/cell-type-consensus/references/consensus-cell-type-reference.tsv>
- `consensus-cell-type-reference.tsv`: <https://github.com/AlexsLemonade/OpenScPCA-analysis/blob/e4dc422dd8ddcdc89d031c289fbd123748db500c/analyses/cell-type-consensus/references/consensus-cell-type-reference.tsv>

@allyhawkins allyhawkins merged commit bc147c0 into main Feb 19, 2025
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@allyhawkins allyhawkins deleted the allyhawkins/add-neuron-to-consensus-ref branch February 19, 2025 20:21
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Update link for consensus celltype reference
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