Merge pull request #122 from AlexsLemonade/allyhawkins/v0.1.3

Prep for v0.1.3

CHANGELOG.md

@@ -8,6 +8,17 @@ Add new release notes in reverse numerical order (newest first) below this comme
 You may want to add temporary notes here for tracking as features are added, before a new release is ready.
 -->
 
+## v0.1.3
+
+- Two new modules:
+  - `seurat-conversion`: converts processed `SingleCellExperiment` objects to `Seurat` objects
+  - `cell-type-consensus`: assigns consensus cell type labels
+- Default release date for ScPCA data is set to `2024-11-25`
+- A `nextflow_schema.json` file defining all workflow parameters is now available
+  - Parameters are also validated as part of the main workflow
+- The `testing` profile can now be used for local testing of the workflow
+
+
 ## v0.1.2
 
 - Update scpcaTools images to v0.4.1 versions

nextflow.config

@@ -4,7 +4,7 @@ manifest {
   homePage = 'https://github.com/AlexsLemonade/openScPCA-nf'
   mainScript = 'main.nf'
   defaultBranch = 'main'
-  version = 'v0.1.2'
+  version = 'v0.1.3'
   nextflowVersion = '>=24.04.0'
   contributors = [
     [

nextflow_schema.json

@@ -115,19 +115,19 @@
         },
         "simulate_sce_container": {
           "type": "string",
-          "default": "public.ecr.aws/openscpca/simulate-sce:v0.2.0"
+          "default": "public.ecr.aws/openscpca/simulate-sce:v0.2.1"
         },
         "doublet_detection_container": {
           "type": "string",
-          "default": "public.ecr.aws/openscpca/doublet-detection:v0.2.0"
+          "default": "public.ecr.aws/openscpca/doublet-detection:v0.2.1"
         },
         "seurat_conversion_container": {
           "type": "string",
-          "default": "public.ecr.aws/openscpca/seurat-conversion:v0.2.0"
+          "default": "public.ecr.aws/openscpca/seurat-conversion:v0.2.1"
         },
         "consensus_cell_type_container": {
           "type": "string",
-          "default": "public.ecr.aws/openscpca/cell-type-consensus:latest"
+          "default": "public.ecr.aws/openscpca/cell-type-consensus:v0.2.1"
         }
       }
     }