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BiSB Bootcamp 2019

Welcome to BiSB! Here you will find resources for Bootcamp (and beyond)!

  • ./computing_environments_setup.md contains instructions on setting up your computing environment - e.g. Anaconda, Jupyter notebooks, notebook kernels
  • ./unix_tutorial/ contains a Jupyter Bash notebook with some intro to Bash
  • ./MLE_tutorial.ipynb is a Python Jupyter notebook with an intro to Maximum Likelihood Estimation
  • ./GLM_tutorial.ipynb is a Python Jupyter notebook with a tutorial on setting up your own simple GLM with a Binomial link function
  • ./OLS_tutorial.ipynb is a Python Jupyter notebook with a simple tutorial on implementing OLS
  • ./resampling_methods_tutorial.ipynb is a tutorial on permutation tests on bootstrapping. Uses the following files:
    • ./treated_survival_times.txt
    • ./untreated_survival_times.txt
  • ./p-values.ipynb is a Python Jupyter notebook with some demonstrations of the p-value distribution, hypothesis testing, and multiple testing correction