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test: automate end-to-end testing #85

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mkatsanto opened this issue Oct 28, 2022 · 1 comment
Open

test: automate end-to-end testing #85

mkatsanto opened this issue Oct 28, 2022 · 1 comment
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future will not be fixed for NOW testing test runs or similar

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@mkatsanto
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Is your feature request related to a problem? Please describe.
Enable automated triggering of zarp run on defined set of input data. Include analysis script that aggregates all the results.

  • Jobstats
  • sample metadata (read depth, read length, organism, read orientation, single/paired, adapters, stranded/unstranded)
  • annotation metadata
  • run configuration
    Does not need to be a table with specific format just make sure we can automatically gather this info and be able to access it at a later point
@mkatsanto mkatsanto added the testing test runs or similar label Oct 28, 2022
@mkatsanto mkatsanto added this to the submission_related_updates milestone Oct 28, 2022
@mkatsanto
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This is issue can be split into more separate issues:

  • multiple tests
  • have a runner
  • statistics on the run with separate scripts

@mkatsanto mkatsanto added the future will not be fixed for NOW label Mar 10, 2023
@uniqueg uniqueg removed this from the submission_related_updates milestone Apr 28, 2023
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