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udockerのエラー #35

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ykohki opened this issue Jun 6, 2019 · 0 comments
Open

udockerのエラー #35

ykohki opened this issue Jun 6, 2019 · 0 comments

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@ykohki
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ykohki commented Jun 6, 2019

サーバーにて、-uまたは--udockerで実行すると止まってしまいます。

bash ../ikra.sh sample.csv human -u

の場合、

+ PIGZ_IMAGE=genevera/docker-pigz
+ udocker pull docker/whalesay
../ikra.sh: line 223: udocker: コマンドが見つかりません
bash ../ikra.sh sample.csv human --udocker

の場合、

+ echo 'ikra.sh: illegal option -- '\''udocker'\'''
ikra.sh: illegal option -- 'udocker'
+ exit 1

となってしまいます。

udockerのインストール自体はできていると思われます。
例)

$ udocker pull docker/whalesay
Downloading layer: sha256:e190868d63f8f8b85b026e53b5724c3c2a4548e1d642953442559cfa5f79b2c9
Downloading layer: sha256:909cd34c6fd77d398af1d93e9d4f7f76104903f237be3d4db7b345a19631f291
Downloading layer: sha256:0b9bfabab7c119abe303f22a146ff78be4ab0abdc798b0a0e97e94e80238a7e8
Downloading layer: sha256:a3ed95caeb02ffe68cdd9fd84406680ae93d633cb16422d00e8a7c22955b46d4
Downloading layer: sha256:00bf65475aba8f1077fa9629f088a5f531d645faeccb6acd7a8626c7d896a4c4
Downloading layer: sha256:c57b6bcc83e3e88fb3748ea3f0cb13d77c4e2ffa7b9a8ded3d636f17d2d83759
Downloading layer: sha256:a3ed95caeb02ffe68cdd9fd84406680ae93d633cb16422d00e8a7c22955b46d4
Downloading layer: sha256:8978f6879e2f86eb7a063e70f7d89feecde9950c40fc68f1f53d00b3c8ce9b52
Downloading layer: sha256:8eed3712d2cfd8c37b19d324452ba9cdb445933c04c9175c4e945b0d7241f1e3
Downloading layer: sha256:a3ed95caeb02ffe68cdd9fd84406680ae93d633cb16422d00e8a7c22955b46d4
Downloading layer: sha256:a3ed95caeb02ffe68cdd9fd84406680ae93d633cb16422d00e8a7c22955b46d4

また、

ikra/ikra.sh

Line 83 in 57c15bd

'-u'|'--undocker' )

'-u'|'--undocker' )

ikra.shの83行目が、undockerになってしまっています。
これはudockerが正しいでしょうか?

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