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# Download pre-built executables and test data (recommended)
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# Linux
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- wget https://github.com/yangao07/longcallD/releases/download/v0.0.2 /longcallD-v0.0.2_x64 -linux.tar.gz
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- tar -zxvf longcallD-v0.0.2_x64 -linux.tar.gz && cd longcallD-v0.0.2_x64 -linux
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+ wget https://github.com/yangao07/longcallD/releases/download/v0.0.3 /longcallD-v0.0.3_x64 -linux.tar.gz
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+ tar -zxvf longcallD-v0.0.3_x64 -linux.tar.gz && cd longcallD-v0.0.3_x64 -linux
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# MacOS
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- wget https://github.com/yangao07/longcallD/releases/download/v0.0.2 /longcallD-v0.0.2_arm64 -macos.tar.gz
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- tar -zxvf longcallD-v0.0.2_arm64 -macos.tar.gz && cd longcallD-v0.0.2_arm64 -macos
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+ wget https://github.com/yangao07/longcallD/releases/download/v0.0.3 /longcallD-v0.0.3_arm64 -macos.tar.gz
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+ tar -zxvf longcallD-v0.0.3_arm64 -macos.tar.gz && cd longcallD-v0.0.3_arm64 -macos
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# PacBio HiFi reads
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./longcallD call ./test_data/chr11_2M.fa ./test_data/HG002_chr11_hifi_test.bam --hifi > HG002_hifi_test.vcf
@@ -35,7 +35,7 @@ man ./longcallD.1
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``` -->
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## Table of Contents
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- - [ Updates (pre-release v0.0.2 )] ( #updates-pre-release-v002 )
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+ - [ Updates (pre-release v0.0.3 )] ( #updates-pre-release-v003 )
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- [ Getting Started] ( #getting-started )
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- [ Table of Contents] ( #table-of-contents )
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- [ Introduction] ( #introduction )
@@ -60,22 +60,22 @@ LongcallD phases long reads into haplotypes using SNPs and small indels before c
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### Pre-built executables (recommended)
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** For Linux:**
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```
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- wget https://github.com/yangao07/longcallD/releases/download/v0.0.2 /longcallD-v0.0.2_x64 -linux.tar.gz
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- tar -zxvf longcallD-v0.0.2_x64 -linux.tar.gz
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+ wget https://github.com/yangao07/longcallD/releases/download/v0.0.3 /longcallD-v0.0.3_x64 -linux.tar.gz
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+ tar -zxvf longcallD-v0.0.3_x64 -linux.tar.gz
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```
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** For macOS:**
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```
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- wget https://github.com/yangao07/longcallD/releases/download/v0.0.2 /longcallD-v0.0.2_arm64 -macos.tar.gz
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- tar -zxvf longcallD-v0.0.2_arm64 -macos.tar.gz
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+ wget https://github.com/yangao07/longcallD/releases/download/v0.0.3 /longcallD-v0.0.3_arm64 -macos.tar.gz
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+ tar -zxvf longcallD-v0.0.3_arm64 -macos.tar.gz
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```
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### Build from source
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To compile longcallD from source, ensure you have ** GCC/clang(9.0+)** and ** zlib** installed.
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It is recommended to use the [ latest release] ( https://github.com/yangao07/longcallD/releases ) .
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```
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- wget https://github.com/yangao07/longcallD/releases/download/v0.0.2 /longcallD-v0.0.2 .tar.gz
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- tar -zxvf longcallD-v0.0.2 .tar.gz
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- cd longcallD-v0.0.2 ; make
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+ wget https://github.com/yangao07/longcallD/releases/download/v0.0.3 /longcallD-v0.0.3 .tar.gz
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+ tar -zxvf longcallD-v0.0.3 .tar.gz
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+ cd longcallD-v0.0.3 ; make
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```
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## Usage
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