LD r or r^2

[matthiasheinig]

Hi,
from the documentation it does not become entirely clear of LD is to be provided as r (correlation) or r^2. Maybe you could add to your readme how you generate this data for instance with plink (--r or --r2 option)?
Thanks a lot for clarifying.
Best,
Matthias

[xqwen]

Thanks, we will clarify it. It is r, i.e., the off-diagonal elements are signed.

Thanks for the tips on plink! we generate ours using the dap-g built-in -dump_summary option.

William

[matthiasheinig]

Thanks for the prompt reply!