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save_perc.py
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'''creates *_perc_*.npz
ALL prospector model paramters are saved
'''
import os, sys, time
import numpy as np
from astropy.table import Table
import prospect.io.read_results as reader
import argparse
parser = argparse.ArgumentParser()
parser.add_argument('--prior', type=str, default='phisfh')
parser.add_argument('--catalog', type=str, default="UNCOVER_v5.0.1_LW_SUPER_CATALOG.fits")
parser.add_argument('--indir', type=str, default='chains_parrot', help='input folder storing chains')
parser.add_argument('--outdir', type=str, default='results', help='output folder storing unweighted chains and quantiles')
args = parser.parse_args()
print(args)
which_prior = args.prior
catalog_file = args.catalog
foo = args.indir
if foo.endswith('/'):
foo = foo[:-1]
sname = os.path.join(args.outdir, 'quant_{}_{}'.format(args.prior, foo)+'.npz')
print('will be saved to', sname)
perc_dir = args.indir
mdir = 'phot_catalog/'
cat = Table.read(mdir+catalog_file)
objid_list = []
zred_spec = []
zred_ml = []
zred = []
total_mass = []
stellar_mass = []
met = []
dust2 = []
dust_index = []
dust1_fraction = []
log_fagn = []
log_agn_tau = []
gas_logz = []
duste_qpah = []
duste_umin = []
log_duste_gamma = []
mwa = []
sfr10 = []
sfr30 = []
sfr100 = []
ssfr10 = []
ssfr30 = []
ssfr100 = []
mu = []
rest_UVJugi = []
rest_UVJugi_map = []
rest_UVJugi_colors = []
rest_UVJugi_colors_map = []
rest_gz = []
rest_gz_map = []
rest_gz_colors = []
rest_gz_colors_map = []
rest_NUVrJ = []
rest_NUVrJ_map = []
rest_NUVrJ_colors = []
rest_NUVrJ_colors_map = []
print(perc_dir)
all_files = os.listdir(perc_dir)
cnt = 0
missed = []
for this_file in all_files:
if this_file.endswith('perc_{}.npz'.format(which_prior)):
mid = int(this_file.split('_')[1])
# print(mid)
ffnpz = os.path.join(perc_dir, this_file)
dat = np.load(ffnpz, allow_pickle=True)
perc = dat['percentiles'][()]
# print(perc.keys())
zred.append(perc['zred'])
total_mass.append(perc['total_mass'])
stellar_mass.append(perc['stellar_mass'])
met.append(perc['logzsol'])
mwa.append(perc['mwa'])
sfr10.append(perc['sfr'][0])
sfr30.append(perc['sfr'][1])
sfr100.append(perc['sfr'][2])
ssfr10.append(perc['ssfr'][0])
ssfr30.append(perc['ssfr'][1])
ssfr100.append(perc['ssfr'][2])
dust2.append(perc['dust2'])
dust_index.append(perc['dust_index'])
dust1_fraction.append(perc['dust1_fraction'])
log_fagn.append(perc['log_fagn'])
log_agn_tau.append(perc['log_agn_tau'])
gas_logz.append(perc['gas_logz'])
duste_qpah.append(perc['duste_qpah'])
duste_umin.append(perc['duste_umin'])
log_duste_gamma.append(perc['log_duste_gamma'])
mu.append(perc['mu'])
rest_UVJugi.append(perc['rest_UVJugi'])
rest_UVJugi_map.append(perc['rest_UVJugi_map'])
rest_UVJugi_colors.append(perc['rest_UVJugi_colors'])
rest_UVJugi_colors_map.append(perc['rest_UVJugi_colors_map'])
rest_gz.append(perc['rest_gz'])
rest_gz_map.append(perc['rest_gz_map'])
rest_gz_colors.append(perc['rest_gz_colors'])
rest_gz_colors_map.append(perc['rest_gz_colors_map'])
rest_NUVrJ.append(perc['rest_NUVrJ'])
rest_NUVrJ_map.append(perc['rest_NUVrJ_map'])
rest_NUVrJ_colors.append(perc['rest_NUVrJ_colors'])
rest_NUVrJ_colors_map.append(perc['rest_NUVrJ_colors_map'])
# make sure all theta idx are the same
zred_ml.append(dat['chain_ml'][0])
idx_ftrue = np.where(cat['id']==mid)[0][0]
zred_spec.append(cat['z_spec'][idx_ftrue])
objid_list.append(mid)
cnt += 1
if cnt % 100 == 0:
print(cnt)
np.savez(sname, objid=objid_list,
zred_spec=zred_spec, zred=zred, zred_ml=zred_ml,
total_mass=total_mass, stellar_mass=stellar_mass, met=met,
dust2=dust2, dust_index=dust_index, dust1_fraction=dust1_fraction,
log_fagn=log_fagn, log_agn_tau=log_agn_tau, gas_logz=gas_logz,
duste_qpah=duste_qpah, duste_umin=duste_umin, log_duste_gamma=log_duste_gamma,
mwa=mwa,
sfr10=sfr10, sfr30=sfr30, sfr100=sfr100,
ssfr10=ssfr10, ssfr30=ssfr30, ssfr100=ssfr100,
mu=mu,
rest_UVJugi=rest_UVJugi, rest_UVJugi_map=rest_UVJugi_map, rest_UVJugi_colors=rest_UVJugi_colors, rest_UVJugi_colors_map=rest_UVJugi_colors_map,
rest_gz=rest_gz, rest_gz_map=rest_gz_map, rest_gz_colors=rest_gz_colors, rest_gz_colors_map=rest_gz_colors_map,
rest_NUVrJ=rest_NUVrJ, rest_NUVrJ_map=rest_NUVrJ_map, rest_NUVrJ_colors=rest_NUVrJ_colors, rest_NUVrJ_colors_map=rest_NUVrJ_colors_map,
)
print('length:', len(objid_list))
print('saved to', sname)