-
Notifications
You must be signed in to change notification settings - Fork 129
/
europe-custom.yaml.lock
2748 lines (2748 loc) · 57.1 KB
/
europe-custom.yaml.lock
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
558
559
560
561
562
563
564
565
566
567
568
569
570
571
572
573
574
575
576
577
578
579
580
581
582
583
584
585
586
587
588
589
590
591
592
593
594
595
596
597
598
599
600
601
602
603
604
605
606
607
608
609
610
611
612
613
614
615
616
617
618
619
620
621
622
623
624
625
626
627
628
629
630
631
632
633
634
635
636
637
638
639
640
641
642
643
644
645
646
647
648
649
650
651
652
653
654
655
656
657
658
659
660
661
662
663
664
665
666
667
668
669
670
671
672
673
674
675
676
677
678
679
680
681
682
683
684
685
686
687
688
689
690
691
692
693
694
695
696
697
698
699
700
701
702
703
704
705
706
707
708
709
710
711
712
713
714
715
716
717
718
719
720
721
722
723
724
725
726
727
728
729
730
731
732
733
734
735
736
737
738
739
740
741
742
743
744
745
746
747
748
749
750
751
752
753
754
755
756
757
758
759
760
761
762
763
764
765
766
767
768
769
770
771
772
773
774
775
776
777
778
779
780
781
782
783
784
785
786
787
788
789
790
791
792
793
794
795
796
797
798
799
800
801
802
803
804
805
806
807
808
809
810
811
812
813
814
815
816
817
818
819
820
821
822
823
824
825
826
827
828
829
830
831
832
833
834
835
836
837
838
839
840
841
842
843
844
845
846
847
848
849
850
851
852
853
854
855
856
857
858
859
860
861
862
863
864
865
866
867
868
869
870
871
872
873
874
875
876
877
878
879
880
881
882
883
884
885
886
887
888
889
890
891
892
893
894
895
896
897
898
899
900
901
902
903
904
905
906
907
908
909
910
911
912
913
914
915
916
917
918
919
920
921
922
923
924
925
926
927
928
929
930
931
932
933
934
935
936
937
938
939
940
941
942
943
944
945
946
947
948
949
950
951
952
953
954
955
956
957
958
959
960
961
962
963
964
965
966
967
968
969
970
971
972
973
974
975
976
977
978
979
980
981
982
983
984
985
986
987
988
989
990
991
992
993
994
995
996
997
998
999
1000
install_repository_dependencies: true
install_resolver_dependencies: true
install_tool_dependencies: false
tools:
- name: mimodd_main
owner: wolma
revisions:
- f0f2795de2c7
tool_panel_section_label: MiModD
- name: dwt_var_perfeature
owner: devteam
revisions:
- 7a15159140d1
tool_panel_section_label: Statistics
- name: bedtools
owner: iuc
revisions:
- 07e8b80f278c
- 0a5c785ac6db
- 3e38c9b3214f
- 4f7a5ccd2ae9
- 589e7e57fd6d
- 64e2edfe7a2c
- 7ab85ac5f64b
- 87ee588b3d45
- a1a923cd89e8
- a68aa6c1204a
- b28e0cfa7ba1
- b8348686a0b9
- ce3c7f062223
- dde39ba9c031
- fe5b4cb8356c
tool_panel_section_label: BED
- name: pizzly
owner: iuc
revisions:
- 91ef4a171202
- f7556cfa4047
tool_panel_section_label: RNA Analysis
- name: mlocarna
owner: rnateam
revisions:
- 59055c49a112
tool_panel_section_label: RNA Analysis
- name: rcas
owner: rnateam
revisions:
- aa9579837a2e
tool_panel_section_label: RNA Analysis
- name: paralyzer
owner: rnateam
revisions:
- 4dbe81be8b81
tool_panel_section_label: RNA Analysis
- name: ebi_search_rest_results
owner: iuc
revisions:
- 42d5e40fcd0b
tool_panel_section_label: Get Data
- name: ebi_metagenomics_run_downloader
owner: iuc
revisions:
- a1ef6c88ee37
- e2e9fae080ad
tool_panel_section_label: Get Data
- name: transformation
owner: ethevenot
revisions:
- d9e05021553c
tool_panel_section_label: Metabolomics
- name: anova
owner: lecorguille
revisions:
- bcd05315efc5
tool_panel_section_label: Statistics
- name: heatmap
owner: ethevenot
revisions:
- db1d80e89156
tool_panel_section_label: Metabolomics
- name: univariate
owner: ethevenot
revisions:
- 140290de7986
tool_panel_section_label: Metabolomics
- name: multivariate
owner: ethevenot
revisions:
- e91de3b04320
tool_panel_section_label: Metabolomics
- name: biosigner
owner: ethevenot
revisions:
- b2414be87d4b
tool_panel_section_label: Metabolomics
- name: probmetab
owner: mmonsoor
revisions:
- 52b222a626b0
tool_panel_section_label: Annotation
- name: lcmsmatching
owner: prog
revisions:
- fb9c0409d85c
tool_panel_section_label: Metabolomics
- name: add_input_name_as_column
owner: mvdbeek
revisions:
- b31219f26a8f
tool_panel_section_label: Text Manipulation
- name: taxonomy_krona_chart
owner: crs4
revisions:
- 020b3087d0b7
tool_panel_section_label: Metagenomic Analysis
- name: text_processing
owner: bgruening
revisions:
- 20344ce0c811
tool_panel_section_label: Text Manipulation
- name: column_maker
owner: devteam
revisions:
- 626658afe4cb
tool_panel_section_label: Text Manipulation
- name: uniprotxml_downloader
owner: galaxyp
revisions:
- e1abc9a35c64
tool_panel_section_label: Get Data
- name: sra_tools
owner: iuc
revisions:
- 1790dcf3c32d
- 1ec814014652
- 26b7446bb17e
- 494b2ec08162
- 4df8de2d0e48
- 516a54ddf218
- 653e89d73fc4
- 6591f049cf7e
- 69ebb7f46e45
- 6ea73833cf67
- 7068f48d0ef9
- 734abc7ac21d
- 751a694ec620
- 83c7d564b128
- 8848455c0270
- aad3885b3216
- b723c120161a
- ba931a59dd59
- c441583adae5
- de0f7e0a3896
- e08a7ad4378b
- e407b9da183a
- f5ea3ce9b9b0
- f8054ea1c365
- fb723c531be5
tool_panel_section_label: Get Data
- name: ega_download_streamer
owner: yhoogstrate
revisions:
- 3e2cccf08053
tool_panel_section_label: Get Data
- name: dorina
owner: rnateam
revisions:
- 6986169fa312
tool_panel_section_label: Get Data
- name: dbbuilder
owner: galaxyp
revisions:
- a85fbebe8b2f
tool_panel_section_label: Get Data
- name: unipept
owner: galaxyp
revisions:
- 34758ab8aaa4
tool_panel_section_label: Get Data
- name: prinseq
owner: iuc
revisions:
- 02befcb391f5
- 1ee282794de3
- 654b3a274ed5
- 6b865dde1baa
tool_panel_section_label: FASTA/FASTQ
- name: add_value
owner: devteam
revisions:
- 745871c0b055
tool_panel_section_label: Text Manipulation
- name: split_file_on_column
owner: bgruening
revisions:
- 90b52d8d6f2c
tool_panel_section_label: Text Manipulation
- name: merge_cols
owner: devteam
revisions:
- f2aac0c5c60d
tool_panel_section_label: Text Manipulation
- name: text_processing
owner: bgruening
revisions:
- 20344ce0c811
tool_panel_section_label: Text Manipulation
- name: column_maker
owner: devteam
revisions:
- 626658afe4cb
tool_panel_section_label: Text Manipulation
- name: coverage
owner: devteam
revisions:
- bc9c66c1e9c9
tool_panel_section_label: Text Manipulation
- name: regex_replace
owner: kellrott
revisions:
- 9a77d5fca67c
tool_panel_section_label: Text Manipulation
- name: tables_arithmetic_operations
owner: devteam
revisions:
- 82fa5062d611
tool_panel_section_label: Text Manipulation
- name: merge
owner: devteam
revisions:
- 0926c81f382c
tool_panel_section_label: Text Manipulation
- name: intersect
owner: devteam
revisions:
- 8ddabc73af92
tool_panel_section_label: Text Manipulation
- name: flanking_features
owner: devteam
revisions:
- 8307665c4b6c
tool_panel_section_label: Text Manipulation
- name: join
owner: devteam
revisions:
- ffbd1de29c28
tool_panel_section_label: Text Manipulation
- name: cluster
owner: devteam
revisions:
- 765ceb06c3e2
tool_panel_section_label: Operate on Genomic Intervals
- name: get_flanks
owner: devteam
revisions:
- 4cd116158aef
tool_panel_section_label: Text Manipulation
- name: complement
owner: devteam
revisions:
- e0a23ab32d7f
tool_panel_section_label: Operate on Genomic Intervals
- name: subtract
owner: devteam
revisions:
- 7a2a604ae9c8
tool_panel_section_label: Operate on Genomic Intervals
- name: basecoverage
owner: devteam
revisions:
- 0a3e3133b09d
tool_panel_section_label: Operate on Genomic Intervals
- name: subtract_query
owner: devteam
revisions:
- 960d5d114184
tool_panel_section_label: Text Manipulation
- name: sed_wrapper
owner: bjoern-gruening
revisions:
- 12ac67b5c81d
tool_panel_section_label: Text Manipulation
- name: unique
owner: bgruening
revisions:
- 7ce75adb93be
tool_panel_section_label: Text Manipulation
- name: dna_filtering
owner: devteam
revisions:
- 549d2cb4c6f2
tool_panel_section_label: Text Manipulation
- name: column_arrange_by_header
owner: bgruening
revisions:
- f18f67056946
tool_panel_section_label: Filter and Sort
- name: seq_filter_by_id
owner: peterjc
revisions:
- fb1313d79396
tool_panel_section_label: Filter and Sort
- name: find_in_reference
owner: jjohnson
revisions:
- c4fd2ea4f988
tool_panel_section_label: Filter and Sort
- name: sample_seqs
owner: peterjc
revisions:
- 02c13ef1a669
tool_panel_section_label: Filter and Sort
- name: collection_column_join
owner: iuc
revisions:
- 071084070619
- 3ddd99c7efee
- 58228a4d58fe
- 9c8536c7ed42
- dfde09461b1e
tool_panel_section_label: Join, Subtract and Group
- name: subtract
owner: devteam
revisions:
- 7a2a604ae9c8
tool_panel_section_label: Operate on Genomic Intervals
- name: bam_to_scidx
owner: iuc
revisions:
- 11fc60f0e942
- 408520e1ae1a
- b737f6d83f48
tool_panel_section_label: Convert Formats
- name: map_peptides_to_bed
owner: galaxyp
revisions:
- 78b8213e122d
tool_panel_section_label: Convert Formats
- name: idconvert
owner: galaxyp
revisions:
- edb33e8224c6
tool_panel_section_label: Convert Formats
- name: resize_coordinate_window
owner: iuc
revisions:
- 08b6255afde7
- 4eb3cc1f8466
- 541f300f322d
- 9ba78e8985dc
tool_panel_section_label: Convert Formats
- name: uniprot_rest_interface
owner: bgruening
revisions:
- 48522382b6a4
tool_panel_section_label: Convert Formats
- name: bigwig_to_bedgraph
owner: bgruening
revisions:
- 3799012ce2ff
tool_panel_section_label: Convert Formats
- name: gffread
owner: devteam
revisions:
- 0232f19d300f
tool_panel_section_label: Convert Formats
- name: msconvert
owner: galaxyp
revisions:
- dd4ba10d0c45
tool_panel_section_label: Convert Formats
- name: tabular_to_fasta
owner: devteam
revisions:
- 0b4e36026794
tool_panel_section_label: FASTA/FASTQ
- name: fasta_to_tabular
owner: devteam
revisions:
- 7e801ab2b70e
tool_panel_section_label: FASTA/FASTQ
- name: fastqtofasta
owner: devteam
revisions:
- 723b5b38d88a
tool_panel_section_label: FASTA/FASTQ
- name: fastq_to_fasta
owner: devteam
revisions:
- 186b8d913e6c
tool_panel_section_label: FASTA/FASTQ
- name: length_and_gc_content
owner: iuc
revisions:
- 2ca1baabdae0
- e3ba567abdf5
- f088370d2a3c
tool_panel_section_label: Extract Features
- name: extract_genomic_dna
owner: iuc
revisions:
- 5cc8e93ee98f
- 80414c33a59a
- 8dd8e89c0603
- c8467246b57e
- e1f5bdd8279c
- e400dcbc60d0
tool_panel_section_id: fetch_sequences___alignments
- name: concat
owner: devteam
revisions:
- d491589307e7
tool_panel_section_label: Operate on Genomic Intervals
- name: complement
owner: devteam
revisions:
- e0a23ab32d7f
tool_panel_section_label: Operate on Genomic Intervals
- name: cluster
owner: devteam
revisions:
- 765ceb06c3e2
tool_panel_section_label: Operate on Genomic Intervals
- name: basecoverage
owner: devteam
revisions:
- 0a3e3133b09d
tool_panel_section_label: Operate on Genomic Intervals
- name: annotation_profiler
owner: devteam
revisions:
- 3b33da018e74
tool_panel_section_label: Operate on Genomic Intervals
- name: numeric_clustering
owner: bgruening
revisions:
- a3fd214e7555
tool_panel_section_label: Statistics
- name: t_test_two_samples
owner: devteam
revisions:
- c2ffc9885b5a
tool_panel_section_label: Statistics
- name: seq_composition
owner: peterjc
revisions:
- c0eb0e5792f3
tool_panel_section_label: Statistics
- name: plot_from_lda
owner: devteam
revisions:
- 08affc5d2aef
tool_panel_section_label: Statistics
- name: mine
owner: devteam
revisions:
- 5e2c89443c44
tool_panel_section_label: Statistics
- name: lda_analysis
owner: devteam
revisions:
- f0b6217f4a0c
tool_panel_section_label: Statistics
- name: generate_pc_lda_matrix
owner: devteam
revisions:
- 04cdbd00dcec
tool_panel_section_label: Statistics
- name: count_gff_features
owner: devteam
revisions:
- fabda887a71f
tool_panel_section_label: Statistics
- name: correlation
owner: devteam
revisions:
- 24e01abf9e34
tool_panel_section_label: Statistics
- name: fasta_nucleotide_color_plot
owner: iuc
revisions:
- 0fba45ac3987
- 980917b09eb8
- e4b5401adcec
tool_panel_section_label: Graph/Display Data
- name: jbrowse
owner: iuc
revisions:
- 0ae74c70b267
- 17359b808b01
- 1cfc579079a6
- 2bb2e07a7a21
- 2c9e5136b416
- 3235aeb45c22
- 4542035c1075
- 667e17248bfe
- 69c5e9c0add0
- 6b774e9d6387
- 6cd09d7b5f37
- 8774b28235bb
- 9de82b4963e6
- a6e57ff585c0
- ca2def38369c
- d0743cb18ed8
- dba3c47e1798
- edb534491f92
- fa30df9b79c2
- fd5dbf0f732e
tool_panel_section_label: Graph/Display Data
- name: venn_list
owner: peterjc
revisions:
- 20d347feb882
- e13206029a72
tool_panel_section_label: Graph/Display Data
- name: mummer
owner: peterjc
revisions:
- d9f3d4779507
tool_panel_section_label: Graph/Display Data
- name: karyotype_plot
owner: guru-ananda
revisions:
- d810aa84ee6a
tool_panel_section_label: Graph/Display Data
- name: ucsc_custom_track
owner: devteam
revisions:
- 760f588e8a26
tool_panel_section_label: Graph/Display Data
- name: scatterplot
owner: devteam
revisions:
- efda9a4a50e7
tool_panel_section_label: Graph/Display Data
- name: histogram
owner: devteam
revisions:
- cdb9e89e2970
tool_panel_section_label: Graph/Display Data
- name: gmaj
owner: devteam
revisions:
- 2cd5ee197ec7
tool_panel_section_label: Graph/Display Data
- name: xy_plot
owner: devteam
revisions:
- 319fa5a9fc1b
tool_panel_section_label: Graph/Display Data
- name: featurecounter
owner: devteam
revisions:
- ac6218e2b686
tool_panel_section_label: Regional Variation
- name: indels_3way
owner: devteam
revisions:
- 5ad24b81dd10
tool_panel_section_label: Regional Variation
- name: draw_stacked_barplots
owner: devteam
revisions:
- e997b710e38a
tool_panel_section_label: Graph/Display Data
- name: delete_overlapping_indels
owner: devteam
revisions:
- f16000dc644b
tool_panel_section_label: Regional Variation
- name: compute_motifs_frequency
owner: devteam
revisions:
- 1f8ee7f9701b
tool_panel_section_label: Regional Variation
- name: compute_motif_frequencies_for_all_motifs
owner: devteam
revisions:
- 5319efa51514
tool_panel_section_label: Regional Variation
- name: categorize_elements_satisfying_criteria
owner: devteam
revisions:
- 586c1f0e1515
tool_panel_section_label: Regional Variation
- name: best_regression_subsets
owner: devteam
revisions:
- 4f33ec73e445
tool_panel_section_label: Statistics
- name: principal_component_analysis
owner: devteam
revisions:
- f568051cdf2e
tool_panel_section_label: Statistics
- name: kernel_principal_component_analysis
owner: devteam
revisions:
- 3d58aa83e4a3
tool_panel_section_label: Statistics
- name: kernel_canonical_correlation_analysis
owner: devteam
revisions:
- 5ce5a2adb875
tool_panel_section_label: Statistics
- name: canonical_correlation_analysis
owner: devteam
revisions:
- 9bc0c48a027f
tool_panel_section_label: Statistics
- name: mutate_snp_codon
owner: devteam
revisions:
- 8f0af7251167
tool_panel_section_label: Evolution
- name: meme_meme
owner: iuc
revisions:
- 19237efe98d1
- 3f0dd362b755
- 57e5d9382f36
- 7ce0fe11b411
- 9dd5373f6a5a
- d20e391eb22f
- e7242484929c
- e8b209806a20
tool_panel_section_label: Motif Tools
- name: meme_fimo
owner: iuc
revisions:
- 01f5d04846c4
- 0c5239d1aa65
- 40b8472e91ca
- c1a9a297ba8b
- c5209f38700d
- d7a6ea1e3b9d
- fd522a964017
tool_panel_section_label: Motif Tools
- name: weblogo3
owner: devteam
revisions:
- c1a9e644d580
tool_panel_section_label: Motif Tools
- name: muscle
owner: crs4
revisions:
- 533b3b2a1e66
tool_panel_section_label: Multiple Alignments
- name: mafft
owner: rnateam
revisions:
- d71e007323d4
tool_panel_section_label: Multiple Alignments
- name: hammock
owner: hammock
revisions:
- 4db310b7e37c
tool_panel_section_label: Multiple Alignments
- name: compalignp
owner: rnateam
revisions:
- 7e55ac3bd458
tool_panel_section_label: Multiple Alignments
- name: mafft
owner: rnateam
revisions:
- d71e007323d4
tool_panel_section_label: Multiple Alignments
- name: clustalw
owner: devteam
revisions:
- d6694932c5e0
tool_panel_section_label: Multiple Alignments
- name: vegan_diversity
owner: iuc
revisions:
- a1b80a746054
- a2c047a2c380
- c58e19ff504a
- db56c8e79b1e
tool_panel_section_label: Metagenomic Analysis
- name: vegan_fisher_alpha
owner: iuc
revisions:
- 0148e5cf20b2
- a5a453f92273
- d6b92ca3a9a1
- f9966e11885b
tool_panel_section_label: Metagenomic Analysis
- name: vegan_rarefaction
owner: iuc
revisions:
- 3d1d965b6423
- af1211ed6c8e
- b0d5976540e3
- dd2705a31239
tool_panel_section_label: Metagenomic Analysis
- name: vsearch
owner: iuc
revisions:
- 576963db5f1b
- 9495df9dd6ef
- b3c7199d8786
- fae6527990af
tool_panel_section_label: Metagenomic Analysis
- name: khmer_filter_abundance
owner: iuc
revisions:
- 29a4d6e2ae9c
- 8c6433857aa8
- 97f65399e30d
- a4970dfc331c
- b86562b4f3fd
- dbe616d126b1
tool_panel_section_label: Metagenomic Analysis
- name: khmer_filter_below_abundance_cutoff
owner: iuc
revisions:
- 00f7064c564b
- 19607c740d19
- 569001af897d
- b469ab47b490
- bf716cfc3225
- d9cc87dfec6e
tool_panel_section_label: Metagenomic Analysis
- name: khmer_extract_partitions
owner: iuc
revisions:
- 1061711538c6
- 2c763fb18010
- 518ba4a77274
- 7d8138b4a593
- 98b53d46e851
- adb3dd5a899f
tool_panel_section_label: Metagenomic Analysis
- name: khmer_abundance_distribution
owner: iuc
revisions:
- 5a97c5bbd51e
- 7624945cacd3
- a02efb62565b
- c0caca5af183
- e0de12ae3fc2
- e699e2747356
tool_panel_section_label: Metagenomic Analysis
- name: khmer_count_median
owner: iuc
revisions:
- 06d1d91c67e5
- 570505540a7b
- 5efc5f21d0c1
- 77410799e8e9
- 7aa811aa3b93
- b3d513c7093e
tool_panel_section_label: Metagenomic Analysis
- name: khmer_partition
owner: iuc
revisions:
- 5a0fa29951ae
- 766ec3dad7ff
- 8388fe31d604
- b7429b53be2a
- c393687bd857
- e562293ee5ec
tool_panel_section_label: Metagenomic Analysis
- name: khmer_normalize_by_median
owner: iuc
revisions:
- 4d23ab83ea29
- 557cc16931f4
- b1fe2ef3d244
- bfd859f04a89
- e84073b420a8
- f0290a079720
tool_panel_section_label: Metagenomic Analysis
- name: khmer_abundance_distribution_single
owner: iuc
revisions:
- 09c6a051c5fd
- 385a965c6f87
- 55109291a355
- 65b382bf9b7c
- 792d520ba676
- c018a72b523e
tool_panel_section_label: Metagenomic Analysis
- name: t2t_report
owner: devteam
revisions:
- 592acb9505fc
tool_panel_section_label: Metagenomic Analysis
- name: t2ps
owner: devteam
revisions:
- 4d9910e996f7
tool_panel_section_label: Metagenomic Analysis
- name: poisson2test
owner: devteam
revisions:
- 5ff18ec88181
tool_panel_section_label: Metagenomic Analysis
- name: lca_wrapper
owner: devteam
revisions:
- 33e8ed5a4601
tool_panel_section_label: Metagenomic Analysis
- name: gi2taxonomy
owner: devteam
revisions:
- 7b1b03c4465d
tool_panel_section_label: Metagenomic Analysis
- name: find_diag_hits
owner: devteam
revisions:
- acf51ff24c7d
tool_panel_section_label: Metagenomic Analysis
- name: fasta_merge_files_and_filter_unique_sequences
owner: galaxyp
revisions:
- 9ad0d336e5ed
tool_panel_section_label: FASTA/FASTQ
- name: lighter
owner: bgruening
revisions:
- 89b453176d05
tool_panel_section_label: FASTA/FASTQ
- name: sickle
owner: iuc
revisions:
- 3905ccd5c631
- 6756c87dc2d4
- edaa8572219d
tool_panel_section_label: FASTA/FASTQ
- name: fastq_paired_end_interlacer
owner: devteam
revisions:
- ec6ddf449651
tool_panel_section_label: FASTA/FASTQ
- name: fastq_paired_end_joiner
owner: devteam
revisions:
- 6a7f5da7c76d
tool_panel_section_label: FASTA/FASTQ
- name: fasta_compute_length
owner: devteam
revisions:
- de2db1bdfbf8
tool_panel_section_label: FASTA/FASTQ
- name: fastq_join
owner: lparsons
revisions:
- 8ec3dfde378b
tool_panel_section_label: FASTA/FASTQ
- name: splitfasta
owner: rnateam
revisions:
- ae4d5733272f
tool_panel_section_label: FASTA/FASTQ
- name: je_clip
owner: gbcs-embl-heidelberg
revisions:
- 8b4ccdf5f7dd
tool_panel_section_label: FASTA/FASTQ
- name: je_demultiplex
owner: gbcs-embl-heidelberg
revisions:
- 6da7b7886cbf
tool_panel_section_label: FASTA/FASTQ
- name: je_demultiplex_illu
owner: gbcs-embl-heidelberg
revisions:
- 69c77f9fc064
tool_panel_section_label: FASTA/FASTQ
- name: je_markdupes
owner: gbcs-embl-heidelberg
revisions:
- 384b972e43bc
tool_panel_section_label: FASTA/FASTQ
- name: align_back_trans
owner: peterjc
revisions:
- 9fbf29a8c12b
tool_panel_section_label: FASTA/FASTQ
- name: seq_filter_by_mapping
owner: peterjc
revisions:
- 8ff0ac66f1a3
tool_panel_section_label: FASTA/FASTQ
- name: pear
owner: iuc
revisions:
- 037f0acc7830
- 240f611a46f3
- 2f804526f5fd
- 581e52f03c5d
- b4c6f054210a
- f69501361cec
tool_panel_section_label: FASTA/FASTQ
- name: fastx_artifacts_filter
owner: devteam
revisions:
- 09070cacefd8
tool_panel_section_label: FASTA/FASTQ
- name: fastx_barcode_splitter
owner: devteam
revisions:
- 8abdedf55101
tool_panel_section_label: FASTA/FASTQ
- name: fastx_clipper
owner: devteam
revisions:
- bdf1ce174e39
tool_panel_section_label: FASTA/FASTQ
- name: fastx_nucleotides_distribution
owner: devteam
revisions:
- 63d6e2daad48
tool_panel_section_label: FASTA/FASTQ
- name: fasta_filter_by_length
owner: devteam
revisions:
- c8cd0a03db49
tool_panel_section_label: FASTA/FASTQ
- name: fasta_concatenate_by_species
owner: devteam
revisions:
- 717aee069681
tool_panel_section_label: FASTA/FASTQ
- name: fastx_collapser
owner: devteam
revisions:
- 421f0af4ee95
tool_panel_section_label: FASTA/FASTQ
- name: fasta_nucleotide_changer
owner: devteam
revisions:
- f81d4362b6c1
tool_panel_section_label: FASTA/FASTQ
- name: fasta_formatter
owner: devteam
revisions:
- 9457a20156db
tool_panel_section_label: FASTA/FASTQ
- name: trim_galore
owner: bgruening
revisions:
- 949f01671246
tool_panel_section_label: FASTA/FASTQ
- name: fastqc
owner: devteam
revisions:
- 484e86282f4b
tool_panel_section_label: FASTA/FASTQ
- name: trimmomatic
owner: pjbriggs
revisions:
- 32f1f56bd970
- 415a165d92bb
tool_panel_section_label: FASTA/FASTQ
- name: cutadapt
owner: lparsons
revisions:
- 01d94df2e32a
tool_panel_section_label: FASTA/FASTQ
- name: fastq_paired_end_joiner
owner: devteam
revisions:
- 6a7f5da7c76d
tool_panel_section_label: FASTA/FASTQ
- name: short_reads_trim_seq
owner: devteam
revisions:
- 25e6fe525306
tool_panel_section_label: FASTA/FASTQ
- name: short_reads_figure_score
owner: devteam
revisions:
- b52b9c7aabd9
tool_panel_section_label: FASTA/FASTQ
- name: tabular_to_fastq
owner: devteam
revisions:
- 92034dcbb40a
tool_panel_section_label: FASTA/FASTQ
- name: fastq_trimmer_by_quality
owner: devteam
revisions:
- 25c24379693a
tool_panel_section_label: FASTA/FASTQ
- name: fastq_trimmer
owner: devteam
revisions:
- e0cfb5a703ce
tool_panel_section_label: FASTA/FASTQ
- name: fastq_to_tabular
owner: devteam
revisions:
- 7da7ddea4425
tool_panel_section_label: FASTA/FASTQ
- name: fastq_stats
owner: devteam