UI trigger for RNAsum workflow

[reisingerf]

A way to manually trigger RNAsum, similar to what's possible in the v1 portal, is still needed in v2.

[alexiswl]

This is probably something that requires a little bit of collaboration from my side to (i.e a lambda function to point at).

Given a subject id can we assume to use the latest versions of umccrise / dragen wts analysis runs?
If so, lambda should only need the subject id and the dataset and should be able to populate the ready event from that?

[reisingerf]

In principle I am OK with whatever works. Just noting that there may be other options and that we don't need to cover all use cases from the start.

If I understand your question correctly, you'd try to infer the required input values given a subject ID only?
This will "hide" the inference in the back-end and it won't be visible to the triggering user. Not sure we want / have to go that way (yet).

For example: we'd usually have the default PANCAN run triggered automatically, right?
An option might be to only allow/support a "rerun" option, i.e. select that run in the UI and say "run this again, but switch the reference", then all required inputs should be present. It also means all required pre-conditions for running RNAsum are covered by default (as otherwise the initial run would not have gone through).
We'd only be supporting a very specific use case, but there should be no guesswork / inference needed and it's the most common use case (others could be handled manually until we have a better grip on them).

Or am I off the mark?