DESCRIPTION

Package: RNAsum
Title: A Robust Tool for Performing Transcriptome Profiling on Cancer Data
Version: 2.0.0
Authors@R: 
    c(person(given = "Sehrish",
             family = "Kanwal",
             role = c("aut", "cre"),
             email = "kanwals@unimelb.edu.au",
             comment = c(ORCID = "0000-0002-5044-4692")),
      person(given = "Jacek",
             family = "Marzec",
             role = c("aut"),
             email = "jacek.marzec@unimelb.edu.au"))
Description: RNA-seq reporting workflow designed to post-process,
    summarise and visualise an output from bcbio-nextgen RNA-seq or Dragen
    RNA pipelines. Its main application is to complement genome-based
    findings and provide additional evidence for detected alterations.
URL: https://umccr.github.io/RNAsum/, https://github.com/umccr/RNAsum
License: MIT + file LICENSE
Depends: 
    R (>= 4.1.0)
Remotes:
    umccr/RNAsum.data
Imports:
    assertthat,
    conflicted,
    dplyr,
    DT,
    EDASeq,
    edgeR,
    fs,
    ggforce,
    ggplot2,
    glue,
    htmltools,
    htmlwidgets,
    knitr,
    limma,
    manhattanly,
    matrixStats,
    optparse,
    pdftools,
    png,
    plotly,
    preprocessCore,
    purrr,
    ragg,
    RCircos,
    readr,
    rlang,
    rmarkdown,
    RNAsum.data,
    scales,
    sessioninfo,
    stats,
    stringr,
    tibble,
    tidyr,
    tximport
Suggests:
    here,
    testthat (>= 3.0.0)
Config/testthat/edition: 3
Encoding: UTF-8
Roxygen: list(markdown = TRUE,
              roclets = c("namespace", "rd", "roxytest::testthat_roclet"))
RoxygenNote: 7.3.1
LazyData: true