Pathology Atlas (English version of Patoloji Atlası)
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Updated
Jun 6, 2024 - HTML
Pathology Atlas (English version of Patoloji Atlası)
Patoloji Atlası
Awesome List of Digital and Computational Pathology Resources
Digital pathology image viewer with support for human/machine generated annotations and markups.
a browser-based DICOM viewer
Computational Pathology Toolbox developed by TIA Centre, University of Warwick.
This repo provides an exhaustive pipeline of processing TCGA whole-slide images for downstream multiple instance learning.
QuPath - Bioimage analysis & digital pathology
An open source online platform for collaborative image labeling of almost everything
A curated list of awesome Multi-instance Learning frameworks for Whole Slide Images (WSIs) classification, segmentation, etc.
Code for the paper " PDL: Regularizing Multiple Instance Learning with Progressive Dropout Layers "
Deep learning library for digital pathology, with both Tensorflow and PyTorch support.
Bio-Formats is a Java library for reading and writing data in life sciences image file formats. It is developed by the Open Microscopy Environment. Bio-Formats is released under the GNU General Public License (GPL); commercial licenses are available from Glencoe Software.
Read and write TIFF files
CytoBrowser, a JavaScript and Node.js driven environment for fast and accessible collaborative online visualization, assessment, and annotation of very large microscopy images.
Deep Learning Inferred Multiplex ImmunoFluorescence for IHC Image Quantification (https://deepliif.org) [Nature Machine Intelligence'22, CVPR'22, MICCAI'23, Histopathology'23, MICCAI'24]
Implementation of state of the art algorithms for uneven illomination correction in whole slide imaging
A .NET microscopy imaging application based on Bio library. Supports various microscopes by using imported libraries & GUI automation. Supports XInput game controllers to move stage, take images, run ImageJ macros on images or Bio C# scripts.
Data-efficient and weakly supervised computational pathology on whole slide images - Nature Biomedical Engineering
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