Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
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Updated
Jun 5, 2024 - Nextflow
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
Nextflow bioinformatics pipeline for large-scale analysis of Multiple Myeloma genomes
Personal Cancer Genome Reporter (PCGR)
Assortment of VCF processing scripts
Generate duplex/single consensus reads to reduce sequencing noises and remove duplications
PhylogicNDT dockcer for clonal evolution analysis
Detect and visualize target mutations by scanning FastQ files directly
Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing
Empirical Bayes somatic variant calling
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