✂️ ⚡ Rapid haploid variant calling and core genome alignment
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Updated
Jul 19, 2024 - Perl
✂️ ⚡ Rapid haploid variant calling and core genome alignment
Strelka2 germline and somatic small variant caller
Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis
Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs
Find causal cell-types underlying complex trait genetics
tools for genetic genealogy and the analysis of consumer DNA test results
tools for reading, writing, merging, and remapping SNPs
Datastructures and algorithms for working with genetic variation
Pan-genomic sequence analysis
vSNP -- validate SNPs
strataG is a toolkit for haploid sequence and multilocus genetic data summaries, and analyses of population structure.
Estimate local SNP heritability and genetic covariance from GWAS summary association statistics.
A haplotype analysis toolkit for natural variation study.
🔖 Get SNP proxies from the 1000 Genomes Project.
An R package for fast and efficient visualizing of GWAS results using Q-Q and Manhattan plots directly from PLINK output files.
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