Collect NIH NCBI SRA metadata of several GEO studies in one search

This repository contains the python package for Helical

A collection of Galaxy-related training material

Differential gene expression analysis and pathway analysis of RNAseq data

Fast, efficient RNA-Seq metrics for quality control and process optimization

User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins

Please consider using/contributing to https://github.com/nf-core/scdownstream

Enhancement the RNA simulator polyester to include polyA tails in the simulated sequences

ARA.v1.6.0

RNA sequencing analysis software

Modeling and correcting fragment sequence bias for RNA-seq

Template R code for bioinformatics analysis pipeline of transcriptomic Illumina datasets

Workshop • Intro to Bioinformatics using NGS data • 5 days

A proof of concept of RNAseq pipeline

Advanced bioinformatics analysis of RNA sequencing data and genomic databases using R. Explore allelic imbalances, SNP variants, and phylogenetic trees to uncover genetic insights and visualize complex data interactions.

🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment

PISCES is a pipeline for rapid transcript quantitation, genetic fingerprinting, and quality control assessment of RNAseq libraries using Salmon.

Bulk RNA-seq Data Processing, Quality Control, and Downstream Analysis Pipeline

Code, documentation, and tutorial for the DGD model trained on bulk RNA-Seq data.

Public repo for the recount Bioconductor workflow that is visible at http://bioconductor.org/help/workflows/