To eventually become an unofficial Pytorch implementation / replication of Alphafold2, as details of the architecture get released
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Updated
Oct 29, 2022 - Python
To eventually become an unofficial Pytorch implementation / replication of Alphafold2, as details of the architecture get released
Bio-Computing Platform Featuring Large-Scale Representation Learning and Multi-Task Deep Learning “螺旋桨”生物计算工具集
Jupyter Notebooks for learning the PyRosetta platform for biomolecular structure prediction and design
Optimizing AlphaFold Training and Inference on GPU Clusters
Protein 3D structure prediction pipeline
Implementation of the Equiformer, SE3/E3 equivariant attention network that reaches new SOTA, and adopted for use by EquiFold for protein folding
Singularity recipe for AlphaFold
Example to fit parameters and run CG simulations using TorchMD and Schnet
Decentralized Protein Folding Bittensor Subnet
Implementation of Invariant Point Attention, used for coordinate refinement in the structure module of Alphafold2, as a standalone Pytorch module
🧬 ManyFold: An efficient and flexible library for training and validating protein folding models
Implementation of trRosetta and trDesign for Pytorch, made into a convenient package, for protein structure prediction and design
Python package for generating Markov state models
An interactive visual simulator for distance-based protein folding
A bash script for an automated Rosetta Abinitio folding simulation on an HPC
AlphaMod's official repository for protein folding
FrameDiPT: an SE(3) diffusion model for protein structure inpainting
OPUS-Fold: An Open-Source Protein Folding Framework Based on Torsion-Angle Sampling
a package of Python modules and example scripts for experimenting with the two-dimensional HP lattice model of Dill and Chan.
Protein structure prediction using optimization methods from the field of machine learning
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