microbiome R package
-
Updated
Aug 4, 2023 - R
microbiome R package
Microbiome Analysis Using R Workshop originally organized for the 2018 ASM General Meeting in Atlanta, GA, but regularly updated since.
16S rDNA V3-V4 amplicon sequencing analysis using dada2, phyloseq, LEfSe, picrust2 and other tools. Demo: https://ycl6.github.io/16S-Demo/
accessory functions for processing microbial community data
This repo contains the R microshades package, which contains a color blind accessible color palette with 30 unique colors and functions for applying these colors to microbiome data.
Mothur procedures for 16S and ITS analysis
Dadaist2 🟨 Highway to R
Analysis of 16S rRNA (dada2 amplicon sequence variants) from human volunteers given various vaccines following two different antibiotics treatments compared to no antibiotics.
Working Demo on 16S rDNA V3-V4 amplicon sequencing analysis using dada2, phyloseq, LEfSe, picrust2 and other tools. Visit repo website for HTML output
A comprehensive and customizable R package for microbiome analysis.
Fantaxtic - Nested Bar Plots for Phyloseq Data
Some of the analytical processes and tools we use to provide rigorous and actionable results to our clients.
Track, Analyze, Visualize: Unravel Your Microbiome's Temporal Pattern with MicrobiomeStat
A model-based visualization method for microbiome data
New to Bioinformatics? Start Here!
Microbial Community Analysis with Chipster
En este repositorio se encuentran todos los scripts utilizados para mi tesis de licenciatura, titulada: "Análisis de perfiles funcionales de la microbiota intestinal de pacientes con trastorno depresivo mayor", la cual utiliza un lenguaje de programación en R y Phyton.
Analysis scripts, data files and plots used in the manuscript
R scripts used for analysis of data reported in Comparison of Small Gut and Whole Gut Microbiota of First-Degree Relatives with Adult Patients with Celiac Disease and Controls
Add a description, image, and links to the phyloseq topic page so that developers can more easily learn about it.
To associate your repository with the phyloseq topic, visit your repo's landing page and select "manage topics."