R scripts used for analysis of data reported in Comparison of Small Gut and Whole Gut Microbiota of First-Degree Relatives with Adult Patients with Celiac Disease and Controls
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Updated
Dec 18, 2017 - HTML
R scripts used for analysis of data reported in Comparison of Small Gut and Whole Gut Microbiota of First-Degree Relatives with Adult Patients with Celiac Disease and Controls
An interactive Jupyter-based tutorial prepared for the de los Reyes lab, interested colleagues, and the North Carolina State University BIT 477/577 Metagenomics course
A simple R package to convert MetaPhlAn 4 output profiles to a phyloseq object.
Tuberculosis and the microbiome
R scripts used for the analysis of microbiomes of nursery-reared Acropora cervicornis
En este repositorio se crearán diferentes flujos de trabajo para el análisis del microbioma con Bioconductor.
Scripts used to analyse metabarcoding data from two different gene regions to assess which provides a more complete picture of the eukaryotic marine microalgae community (EMC).
R workflows used to analyze microbial community sequence data
Analysis of 16S rRNA (dada2 amplicon sequence variants) from human volunteers given various vaccines following two different antibiotics treatments compared to no antibiotics.
Aplicación en Shiny del proyecto desarrollado en el repositorio Andera de análisis metagenómicos de microbiomas
En este repositorio se encuentran todos los scripts utilizados para mi tesis de licenciatura, titulada: "Análisis de perfiles funcionales de la microbiota intestinal de pacientes con trastorno depresivo mayor", la cual utiliza un lenguaje de programación en R y Phyton.
Analysis for amplicon data
Microbial Community Analysis with Chipster
Former version of METAPIPE
dar: runs multiple differential abundance analysis methods and through a consensus strategy returns a set of differentially abundant features.
R package for analyzing microbial co-occurences
Analysis scripts, data files and plots used in the manuscript
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