R scripts used for analysis of data reported in Comparison of Small Gut and Whole Gut Microbiota of First-Degree Relatives with Adult Patients with Celiac Disease and Controls
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Updated
Dec 18, 2017 - HTML
R scripts used for analysis of data reported in Comparison of Small Gut and Whole Gut Microbiota of First-Degree Relatives with Adult Patients with Celiac Disease and Controls
How to analyze shotgun metagenomic data with phyloseq - a walkthrough
An interactive Jupyter-based tutorial prepared for the de los Reyes lab, interested colleagues, and the North Carolina State University BIT 477/577 Metagenomics course
Analysis for amplicon data
Some of the analytical processes and tools we use to provide rigorous and actionable results to our clients.
A simple R package to convert MetaPhlAn 4 output profiles to a phyloseq object.
Tuberculosis and the microbiome
R scripts used for the analysis of microbiomes of nursery-reared Acropora cervicornis
En este repositorio se crearán diferentes flujos de trabajo para el análisis del microbioma con Bioconductor.
Former version of METAPIPE
Scripts used to analyse metabarcoding data from two different gene regions to assess which provides a more complete picture of the eukaryotic marine microalgae community (EMC).
R scripts used for the analysis of microbiomes associated with stony coral tissue loss disease (SCTLD) in the Florida Reef Tract
dar: runs multiple differential abundance analysis methods and through a consensus strategy returns a set of differentially abundant features.
R workflows used to analyze microbial community sequence data
Aplicación en Shiny del proyecto desarrollado en el repositorio Andera de análisis metagenómicos de microbiomas
R package for analyzing microbial co-occurences
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