A pipeline for metabarcoding fungi and other eukaryotes with full-length ITS sequenced with PacBio
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Updated
Jun 14, 2024 - Nextflow
A pipeline for metabarcoding fungi and other eukaryotes with full-length ITS sequenced with PacBio
Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomes
A phase-aware pharmacogenomic diplotyper for PacBio datasets
Transcript discovery and quantification with long RNA reads (Nanopores and PacBio)
Lightweight bioinformatics pipeline for microbial genome recovery
A collection of bioinformatics tools for use with galaxy written at Quadram Institute
Mitochondrial Long-read Iterative Assembly
simplified cellranger for long-read data
Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling
Hifiasm: a haplotype-resolved assembler for accurate Hifi reads
Mapping-based Genome Size Estimation (MGSE) performs an estimation of a genome size based on a read mapping to an existing genome sequence assembly.
Inversion status and de novo assembly of Drosophila melanogaster
ClairS-TO - a deep-learning method for tumor-only somatic variant calling
A fully integrated K-mer Informed Toolkit for Bioinformatics
Quality control plotting for long reads
A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies
Fast and accurate de novo assembler for long reads
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