DupFinder: A tools to detect the duplicated genes using Illumina and Nanopore sequencing data
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Updated
Sep 13, 2023 - Nextflow
DupFinder: A tools to detect the duplicated genes using Illumina and Nanopore sequencing data
A python package storing different tools for different NGS operations
pyAmpli: an amplicon-based variant filter pipeline for targeted enriched resequencing data
High-throughput Tabular Data Processor (HTDP)
🐳 Docker Image for STATegraEMS
a core part of the MiModD package for use as a library
Meta16s - an all-in-one solution for streamlined 16s analyses
MegaPath: sensitive and rapid pathogen detection using metagenomic NGS data; MegaPath-Amplicon: filtering module for metagenomic amplicon data
Implementation of the Analytic Hierarchy Process (AHP) to obtain the immunogenicity score of wheat lines based on their celiac disease (CD) epitopes matches on alpha- and gamma-gliadins amplicons by NGS and the score for oligopeptides based on an IFN-g ELISpot assays with fresh peripherical blood mononuclear cells (PBMCs).
A collection of various tools useful for the deep analysis of data generated via the CRSSANT/rna2d3d pipeline.
RAD-seq protocols for the Agilent NGS workstation option B.
software for processing tuberculosis whole genome data. interface to the BWA, VarScan, SamTools etc.
Create a normalized heatmap for targeted RNAseq count matrix using user-defined housekeeping gene normalization.
Different approaches to calculate mappability and GC-rich tracks for danio rerio genomes
Workflow to perform a Variant Calling Analysis
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