multiqc
Here are 43 public repositories matching this topic...
Walks through installation and usage of FASTQC, MultiQC, Trimmomatic, and Salmon for transcriptomic data preprocessing. Includes Grid Engine shell scripts that can be looped over many files in a directory.
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Feb 9, 2024 - R
CCBR pipeline for preliminary QC and peak calling from ATACseq datasets
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Apr 23, 2024 - Shell
Run multiple metagenome filtering programs using Docker containers
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Aug 4, 2023 - Shell
Build Docker container for MultiQC and (optionally) convert to Apptainer/Singularity.
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Feb 28, 2023 - Dockerfile
The repository contain directories of projects done during the bioinformatics degree program
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Nov 25, 2022 - HTML
nice utility methods for Nextflow pipelines
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May 9, 2024 - Groovy
Docker to run multiqc for combining bioinformatic log reports
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Mar 15, 2018
Count your fastq-formatted rna-seq reads with Salmon
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Apr 10, 2020 - Python
Classification of RNA-Seq samples using circRNA expression
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Sep 19, 2018 - HTML
Align reads over a reference genome, filter aligned-reads, and mark duplicates
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Apr 24, 2024 - Python
Exploring Bioinformatics pipelines
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Aug 12, 2021 - HTML
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Oct 20, 2022 - Jupyter Notebook
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