MultiQC plugin for the National Genomics Infrastructure in Stockholm, Sweden.
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Updated
Aug 4, 2023 - Python
MultiQC plugin for the National Genomics Infrastructure in Stockholm, Sweden.
Walks through installation and usage of FASTQC, MultiQC, Trimmomatic, and Salmon for transcriptomic data preprocessing. Includes Grid Engine shell scripts that can be looped over many files in a directory.
The repository contain directories of projects done during the bioinformatics degree program
nice utility methods for Nextflow pipelines
A Snakemake workflow for quality control assessment of Illumina NGS data using FastQC and MultiQC
Build Docker container for MultiQC and (optionally) convert to Apptainer/Singularity.
Docker to run multiqc for combining bioinformatic log reports
Classification of RNA-Seq samples using circRNA expression
Snakemake workflow for Salmon quantification and FastQC quality controls
Align reads over a reference genome, filter aligned-reads, and mark duplicates
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