An analysis and visualization platform for 'omics data
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Updated
Jun 21, 2024 - Python
An analysis and visualization platform for 'omics data
SortMeRNA: next-generation sequence filtering and alignment tool
Statistical package for metaome denovo assembly results.
sensitive and precise assembly of short sequencing reads
Assembly and annotation of metatranscriptomic or metagenomic data for prokaryotic, eukaryotic and viruses.
MTD: a unique pipeline for host and meta-transcriptome joint and integrative analyses of RNA-seq data
Open-source opinionated Galaxy-based framework for microbiota analysis
Taxonomic classification of metagenomic contigs
A tool for representing genomic potential and transcriptomic expression into KEGG pathways
Interactive visualisation and data annotation for meta-omics data
Meta-Omics Software for Community Analysis
Genome-centric Multi-omic Analysis Workflow for the Marinimicrobia paper
Comparative Metatranscriptomics Workflow
Repository associated with Jenior ML, et al. (2018). mSphere.
This workflow performs a metatranscriptomics and bulk RNAseq analysis from the sequencing output data to the differential expression analyses.
gNOMO2 allows integrated multi-omics analyses of microbiomes
A pipeline for TotalRNA analysis
Nextflow (nf-core) workflow for mapping reads to large collections of genomes.
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