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Sep 21, 2018 - R
chromatin-interaction
Here are 17 public repositories matching this topic...
RB represses cohesin-dependent loop formation and safeguards E2F-independent transcription
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Apr 3, 2024 - Jupyter Notebook
HiSIF: Genome-wide chromatin interactions identify characteristic promoter-distal loops
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Oct 20, 2021 - C++
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Apr 23, 2019 - HTML
Identification of dynamic changes in chromatin conformation is a fundamental task in genetics. In 2020, Galan et al. presented CHESS (Comparison of Hi-C Experiments using Structural Similarity), a novel computational algorithm designed for systematic identification of structural differences in chromatin-contact maps. Using CHESS, the same group …
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May 15, 2023 - Python
Code for my Master project
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Jun 23, 2023 - Python
3CPET: Finding Co-factor Complexes in Chia-PET experiment using a Hierarchical Dirichlet Process
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Oct 6, 2020 - R
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Mar 29, 2019 - Jupyter Notebook
An R package for analyzing UMI-4C chromatin contact data.
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Mar 22, 2024 - R
7C: Computational Chromosome Conformation Capture by Correlation of ChIP-seq at CTCF motifs
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Dec 16, 2018 - R
Bioinformatic analysis of RNA-Seq, WGBS, and Hi-C in Arabidopsis
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Jan 6, 2020 - R
LoopPredictor: Predicting unknown enhancer-mediated genome topology by an ensemble machine learning model
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Jun 18, 2021 - Python
Statistical Modeling of ChIA-PET interactions
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Aug 6, 2018 - Shell
Scripts to create cartoons of 3D genomes
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Feb 27, 2024 - Python
Enhanced and elegant flexible peak/loop/domain -calling and analysis tool for 1D/3D genomic data.
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Mar 20, 2024 - Python
A preprocessing and QC pipeline for HiChIP data
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Jul 11, 2022 - HTML
Accurate and flexible loops calling tool for 3D genomic data.
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May 19, 2022 - Python
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