Automatically exported from code.google.com/p/model-selection
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Updated
Aug 8, 2023 - Java
Automatically exported from code.google.com/p/model-selection
Python code to convert STR length data to number of repetitions
Dockerized BEASTvntr : a package for BEAST2 implementing phylogenetic analysis for VNTR or Microsatellites
nice algorithm to initialize starting trees in BEAST2
Example for BEAST v2.5 paper
Data and scripts to reproduce the molecular clock dating analyses presented in "Ancient bacterial genomes reveal a formerly unknown diversity of Treponema pallidum strains in early modern Europe (Majander et al.)
Codon substitution models for DNA
A dedicated pipeline designed for the inference of COVID19 transmission networks in a population complete with the prediction of unsampled sources of infection using SARS-CoV-2 genomic sequences. Our pipeline is built upon the BEAST2 and TransPhylo software.
Nextflow pipeline for estimation of evolutionary rate using Bayesian statistics.
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