MICA-aligner is a new short-read aligner that is optimized in view of MIC's limitation and the extra parallelism inside each MIC core.
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Updated
Dec 24, 2023 - C
MICA-aligner is a new short-read aligner that is optimized in view of MIC's limitation and the extra parallelism inside each MIC core.
Optimization of operations from pairwise2 module in Biopython library
Showcase of parallelization technologies using sequence alignment algorithms
DIDA Project
Data on measurably evolving populations (MEPs)
This is an App that allows You to perform some task on the Bioinformatics field.
sub-optimal local pairwise alignments and visualization
Materials for the ACE - Uganda course "Principles of Sequence Analysis and Phylogenetics" given in Spring 2020.
This is a project to contribute utilities for ViruSurf, a viral db centered in viral sequences.
Mini tool for arranging HTML elements along with ellipse subset shapes
Scalable RNA-seq analysis
🪱 PARASITE || A parallel sentence data preprocessing toolkit. Originally developed as a part of the `en-ru` winner submission of WMT20 Biomedical Translation Task.
Align Tools is just perfect Unity asset plugin to align gui object
Python code to compute adatper content in reads, kmer content, per-base-GC content (at a specific position in a read alignment, against reference genome), per base NC content (at a specific position in a read alignment against the reference genome), per base seq quality (across aligned reads), per base sequence content, per base quality scores, …
Finding outlier sequences in amino acid multiple sequence alignments.
Evaluating the consistency of molecular diagnostic characters (signature characters) detected by DeSignate.
The effects of word segmentation quality on word alignments.
Jupiter Bioinformatics (V2) uses the local sequence alignment algorithm and a few stored experiments for further experimentation on sequence alignment. It is an open source application designed in native JavaScript, that is able to align two sequences/texts in order to match the regions that are similar.
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