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task1a.py
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task1a.py
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#!/usr/bin/env python
# -*- coding: utf-8 -*-
# DCASE 2019
# Task 1A: Acoustic Scene Classification
# Baseline system
# ---------------------------------------------
# Author: Toni Heittola ( [email protected] ), Tampere University / Audio Research Group
# License: MIT
import dcase_util
import sys
import numpy
import os
import sed_eval
from utils import *
__version_info__ = ('1', '0', '0')
__version__ = '.'.join(__version_info__)
def main(argv):
# Read application default parameter file
parameters = dcase_util.containers.DictContainer().load(
filename='task1a.yaml'
)
# Initialize application parameters
param = dcase_util.containers.DCASEAppParameterContainer(
parameters,
path_structure={
'FEATURE_EXTRACTOR': ['FEATURE_EXTRACTOR'],
'FEATURE_NORMALIZER': ['FEATURE_EXTRACTOR'],
'LEARNER': ['DATA_PROCESSING_CHAIN', 'LEARNER'],
'RECOGNIZER': ['DATA_PROCESSING_CHAIN', 'LEARNER', 'RECOGNIZER'],
}
)
# Handle application arguments
args, overwrite = handle_application_arguments(
param=param,
application_title='Task 1A: Acoustic Scene Classification',
version=__version__
)
# Process parameters, this is done only after application argument handling in case
# parameters where injected from command line.
param.process()
if args.dataset_path:
# Download only dataset if requested
# Make sure given path exists
dcase_util.utils.Path().create(
paths=args.dataset_path
)
# Get dataset and initialize
dcase_util.datasets.dataset_factory(
dataset_class_name=param.get_path('dataset.parameters.dataset'),
data_path=args.dataset_path,
).initialize().log()
sys.exit(0)
if args.parameter_set:
# Check parameter set ids given as program arguments
parameters_sets = args.parameter_set.split(',')
# Check parameter_sets
for set_id in parameters_sets:
if not param.set_id_exists(set_id=set_id):
raise ValueError('Parameter set id [{set_id}] not found.'.format(set_id=set_id))
else:
parameters_sets = [param.active_set()]
# Get application mode
if args.mode:
application_mode = args.mode
else:
application_mode = 'dev'
# Get overwrite flag
if overwrite is None:
overwrite = param.get_path('general.overwrite')
# Make sure all system paths exists
dcase_util.utils.Path().create(
paths=list(param['path'].values())
)
# Setup logging
dcase_util.utils.setup_logging(
logging_file=os.path.join(param.get_path('path.log'), 'task1a.log')
)
# Get logging interface
log = dcase_util.ui.ui.FancyLogger()
# Log title
log.title('DCASE2019 / Task1A -- Acoustic scene classification')
log.line()
if args.show_results:
# Show evaluated systems
show_results(param=param, log=log)
sys.exit(0)
if args.show_set_list:
show_parameter_sets(param=param, log=log)
sys.exit(0)
# Create timer instance
timer = dcase_util.utils.Timer()
for parameter_set in parameters_sets:
# Set parameter set
param['active_set'] = parameter_set
param.update_parameter_set(parameter_set)
# Get dataset and initialize
db = dcase_util.datasets.dataset_factory(
dataset_class_name=param.get_path('dataset.parameters.dataset'),
data_path=param.get_path('path.dataset'),
).initialize()
if application_mode == 'eval' or application_mode == 'leaderboard':
# Application is set to work in 'eval' or 'leaderboard' mode. In these modes, training is done with
# all data from development dataset, and testing with all data from evaluation dataset.
# Make sure we are using all data
active_folds = db.folds(
mode='full'
)
else:
# Application working in normal mode aka 'dev' mode
# Get active folds from dataset
active_folds = db.folds(
mode=param.get_path('dataset.parameters.evaluation_mode')
)
# Get active fold list from parameters
active_fold_list = param.get_path('general.active_fold_list')
if active_fold_list and len(set(active_folds).intersection(active_fold_list)) > 0:
# Active fold list is set and it intersects with active_folds given by dataset class
active_folds = list(set(active_folds).intersection(active_fold_list))
# Print some general information
show_general_information(
parameter_set=parameter_set,
active_folds=active_folds,
param=param,
db=db,
log=log
)
if param.get_path('flow.feature_extraction'):
# Feature extraction stage
log.section_header('Feature Extraction')
timer.start()
processed_items = do_feature_extraction(
db=db,
param=param,
log=log,
overwrite=overwrite
)
timer.stop()
log.foot(
time=timer.elapsed(),
item_count=len(processed_items)
)
if param.get_path('flow.feature_normalization'):
# Feature extraction stage
log.section_header('Feature Normalization')
timer.start()
processed_items = do_feature_normalization(
db=db,
folds=active_folds,
param=param,
log=log,
overwrite=overwrite
)
timer.stop()
log.foot(
time=timer.elapsed(),
item_count=len(processed_items)
)
if param.get_path('flow.learning'):
# Learning stage
log.section_header('Learning')
timer.start()
processed_items = do_learning(
db=db,
folds=active_folds,
param=param,
log=log,
overwrite=overwrite
)
timer.stop()
log.foot(
time=timer.elapsed(),
item_count=len(processed_items)
)
if application_mode == 'dev':
# System evaluation in 'dev' mode
if param.get_path('flow.testing'):
# Testing stage
log.section_header('Testing')
timer.start()
processed_items = do_testing(
db=db,
scene_labels=db.scene_labels(),
folds=active_folds,
param=param,
log=log,
overwrite=overwrite
)
timer.stop()
log.foot(
time=timer.elapsed(),
item_count=len(processed_items)
)
if args.output_file:
save_system_output(
db=db,
folds=active_folds,
param=param,
log=log,
output_file=args.output_file
)
if param.get_path('flow.evaluation'):
# Evaluation stage
log.section_header('Evaluation')
timer.start()
do_evaluation(
db=db,
folds=active_folds,
param=param,
log=log,
application_mode=application_mode
)
timer.stop()
log.foot(
time=timer.elapsed(),
)
elif application_mode == 'eval' or application_mode == 'leaderboard':
# System evaluation in eval/leaderboard mode
if application_mode == 'eval':
# Get set id for eval parameters, test if current set id with eval post fix exists
eval_parameter_set_id = param.active_set() + '_eval'
if not param.set_id_exists(eval_parameter_set_id):
raise ValueError(
'Parameter set id [{set_id}] not found for eval mode.'.format(
set_id=eval_parameter_set_id
)
)
elif application_mode == 'leaderboard':
# Get set id for eval parameters, test if current set id with eval post fix exists
eval_parameter_set_id = param.active_set() + '_leaderboard'
if not param.set_id_exists(eval_parameter_set_id):
raise ValueError(
'Parameter set id [{set_id}] not found for leaderboard mode.'.format(
set_id=eval_parameter_set_id
)
)
# Change active parameter set
param.update_parameter_set(eval_parameter_set_id)
# Get eval dataset and initialize
db_eval = dcase_util.datasets.dataset_factory(
dataset_class_name=param.get_path('dataset.parameters.dataset'),
data_path=param.get_path('path.dataset'),
).initialize()
# Get active folds
active_folds = db_eval.folds(
mode='full'
)
if param.get_path('flow.feature_extraction'):
# Feature extraction for eval
log.section_header('Feature Extraction')
timer.start()
processed_items = do_feature_extraction(
db=db_eval,
param=param,
log=log,
overwrite=overwrite
)
timer.stop()
log.foot(
time=timer.elapsed(),
item_count=len(processed_items)
)
if param.get_path('flow.testing'):
# Testing stage for eval
log.section_header('Testing')
timer.start()
processed_items = do_testing(
db=db_eval,
scene_labels=db.scene_labels(),
folds=active_folds,
param=param,
log=log,
overwrite=overwrite
)
timer.stop()
log.foot(
time=timer.elapsed(),
item_count=len(processed_items)
)
if args.output_file:
save_system_output(
db=db_eval,
folds=active_folds,
param=param,
log=log,
output_file=args.output_file,
mode='leaderboard' if application_mode == 'leaderboard' else 'dcase'
)
if db_eval.reference_data_present and param.get_path('flow.evaluation'):
if application_mode == 'eval':
# Evaluation stage for eval
log.section_header('Evaluation')
timer.start()
do_evaluation_task1a_eval(
db=db_eval,
folds=active_folds,
param=param,
log=log,
application_mode=application_mode
)
timer.stop()
log.foot(
time=timer.elapsed(),
)
elif application_mode == 'leaderboard':
# Evaluation stage for eval
log.section_header('Evaluation')
timer.start()
do_evaluation_task1a_leaderboard(
db=db_eval,
folds=active_folds,
param=param,
log=log,
application_mode=application_mode
)
timer.stop()
log.foot(
time=timer.elapsed(),
)
return 0
def do_feature_extraction(db, param, log, overwrite=False):
"""Feature extraction stage
Parameters
----------
db : dcase_util.dataset.Dataset
Dataset
param : dcase_util.containers.DCASEAppParameterContainer
Application parameters
log : dcase_util.ui.FancyLogger
Logging interface
overwrite : bool
Overwrite data always
Default value False
Returns
-------
list of str
"""
# Prepare feature extractor
mel_extractor = dcase_util.features.MelExtractor(
**param.get_path('feature_extractor.parameters', {})
)
# Loop over all audio files in the current dataset and extract acoustic features for each of them.
processed_files = []
for item_id, audio_filename in enumerate(db.audio_files):
# Get filename for feature data from audio filename
feature_filename = dcase_util.utils.Path(
path=audio_filename
).modify(
path_base=param.get_path('path.application.feature_extractor'),
filename_extension='.cpickle'
)
if not os.path.isfile(feature_filename) or overwrite:
log.line(
data='[{item: >5} / {total}] [{filename}]'.format(
item=item_id,
total=len(db.audio_files),
filename=os.path.split(audio_filename)[1]
),
indent=2
)
# Load audio data
audio = dcase_util.containers.AudioContainer().load(
filename=audio_filename,
mono=True,
fs=param.get_path('feature_extractor.fs')
)
# Extract features and store them into FeatureContainer, and save it to the disk
dcase_util.containers.FeatureContainer(
data=mel_extractor.extract(audio.data),
time_resolution=param.get_path('feature_extractor.hop_length_seconds')
).save(
filename=feature_filename
)
processed_files.append(feature_filename)
return processed_files
def do_feature_normalization(db, folds, param, log, overwrite=False):
"""Feature normalization stage
Parameters
----------
db : dcase_util.dataset.Dataset
Dataset
folds : list
List of active folds
param : dcase_util.containers.DCASEAppParameterContainer
Application parameters
log : dcase_util.ui.FancyLogger
Logging interface
overwrite : bool
Overwrite data always
Default value False
Returns
-------
list of str
"""
# Loop over all active cross-validation folds and calculate mean and std for the training data
processed_files = []
for fold in folds:
log.line(
data='Fold [{fold}]'.format(fold=fold),
indent=2
)
# Get filename for the normalization factors
fold_stats_filename = os.path.join(
param.get_path('path.application.feature_normalizer'),
'norm_fold_{fold}.cpickle'.format(fold=fold)
)
if not os.path.isfile(fold_stats_filename) or overwrite:
normalizer = dcase_util.data.Normalizer(
filename=fold_stats_filename
)
# Loop through all training data
for item in db.train(fold=fold):
# Get feature filename
feature_filename = dcase_util.utils.Path(
path=item.filename
).modify(
path_base=param.get_path('path.application.feature_extractor'),
filename_extension='.cpickle'
)
# Load feature matrix
features = dcase_util.containers.FeatureContainer().load(
filename=feature_filename
)
# Accumulate statistics
normalizer.accumulate(
data=features
)
# Finalize and save
normalizer.finalize().save()
processed_files.append(fold_stats_filename)
return processed_files
def do_learning(db, folds, param, log, overwrite=False):
"""Learning stage
Parameters
----------
db : dcase_util.dataset.Dataset
Dataset
folds : list
List of active folds
param : dcase_util.containers.DCASEAppParameterContainer
Application parameters
log : dcase_util.ui.FancyLogger
Logging interface
overwrite : bool
Overwrite data always
Default value False
Returns
-------
nothing
"""
# Loop over all cross-validation folds and learn acoustic models
processed_files = []
for fold in folds:
log.line(
data='Fold [{fold}]'.format(fold=fold),
indent=2
)
# Get model filename
fold_model_filename = os.path.join(
param.get_path('path.application.learner'),
'model_fold_{fold}.h5'.format(fold=fold)
)
if not os.path.isfile(fold_model_filename) or overwrite:
log.line()
# Get normalization factor filename
fold_stats_filename = os.path.join(
param.get_path('path.application.feature_normalizer'),
'norm_fold_{fold}.cpickle'.format(fold=fold)
)
# Create data processing chain for features
data_processing_chain = dcase_util.processors.ProcessingChain()
for chain in param.get_path('data_processing_chain.parameters.chain'):
processor_name = chain.get('processor_name')
init_parameters = chain.get('init_parameters', {})
# Inject parameters
if processor_name == 'dcase_util.processors.NormalizationProcessor':
init_parameters['filename'] = fold_stats_filename
data_processing_chain.push_processor(
processor_name=processor_name,
init_parameters=init_parameters,
)
# Create meta processing chain for reference data
meta_processing_chain = dcase_util.processors.ProcessingChain()
for chain in param.get_path('meta_processing_chain.parameters.chain'):
processor_name = chain.get('processor_name')
init_parameters = chain.get('init_parameters', {})
# Inject parameters
if processor_name == 'dcase_util.processors.OneHotEncodingProcessor':
init_parameters['label_list'] = db.scene_labels()
meta_processing_chain.push_processor(
processor_name=processor_name,
init_parameters=init_parameters,
)
if param.get_path('learner.parameters.validation_set') and param.get_path('learner.parameters.validation_set.enable', True):
# Get validation files
training_files, validation_files = db.validation_split(
fold=fold,
split_type='balanced',
validation_amount=param.get_path('learner.parameters.validation_set.validation_amount'),
balancing_mode=param.get_path('learner.parameters.validation_set.balancing_mode'),
seed=param.get_path('learner.parameters.validation_set.seed', 0),
verbose=True
)
else:
# No validation set used
training_files = db.train(fold=fold).unique_files
validation_files = dcase_util.containers.MetaDataContainer()
# Create item_list_train and item_list_validation
item_list_train = []
item_list_validation = []
for item in db.train(fold=fold):
# Get feature filename
feature_filename = dcase_util.utils.Path(
path=item.filename
).modify(
path_base=param.get_path('path.application.feature_extractor'),
filename_extension='.cpickle'
)
item_ = {
'data': {
'filename': feature_filename
},
'meta': {
'label': item.scene_label
}
}
if item.filename in validation_files:
item_list_validation.append(item_)
elif item.filename in training_files:
item_list_train.append(item_)
# Setup keras, run only once
dcase_util.keras.setup_keras(
seed=param.get_path('learner.parameters.random_seed'),
profile=param.get_path('learner.parameters.keras_profile'),
backend=param.get_path('learner.parameters.backend', 'tensorflow'),
print_indent=2
)
if param.get_path('learner.parameters.generator.enable'):
# Create data generators for training and validation
# Get generator class, class is inherited from keras.utils.Sequence class.
KerasDataSequence = dcase_util.keras.get_keras_data_sequence_class()
# Training data generator
train_data_sequence = KerasDataSequence(
item_list=item_list_train,
data_processing_chain=data_processing_chain,
meta_processing_chain=meta_processing_chain,
batch_size=param.get_path('learner.parameters.fit.batch_size'),
data_format=param.get_path('learner.parameters.data.data_format'),
target_format=param.get_path('learner.parameters.data.target_format'),
**param.get_path('learner.parameters.generator', default={})
)
# Show data properties
train_data_sequence.log()
if item_list_validation:
# Validation data generator
validation_data_sequence = KerasDataSequence(
item_list=item_list_validation,
data_processing_chain=data_processing_chain,
meta_processing_chain=meta_processing_chain,
batch_size=param.get_path('learner.parameters.fit.batch_size'),
data_format=param.get_path('learner.parameters.data.data_format'),
target_format=param.get_path('learner.parameters.data.target_format')
)
else:
validation_data_sequence = None
# Get data item size
data_size = train_data_sequence.data_size
else:
# Collect training data and corresponding targets to matrices
log.line('Collecting training data', indent=2)
X_train, Y_train, data_size = dcase_util.keras.data_collector(
item_list=item_list_train,
data_processing_chain=data_processing_chain,
meta_processing_chain=meta_processing_chain,
target_format=param.get_path('learner.parameters.data.target_format', 'single_target_per_sequence'),
channel_dimension=param.get_path('learner.parameters.data.data_format', 'channels_first'),
verbose=True,
print_indent=4
)
log.foot(indent=2)
if item_list_validation:
log.line('Collecting validation data', indent=2)
X_validation, Y_validation, data_size = dcase_util.keras.data_collector(
item_list=item_list_validation,
data_processing_chain=data_processing_chain,
meta_processing_chain=meta_processing_chain,
target_format=param.get_path('learner.parameters.data.target_format', 'single_target_per_sequence'),
channel_dimension=param.get_path('learner.parameters.data.data_format', 'channels_first'),
verbose=True,
print_indent=4
)
log.foot(indent=2)
validation_data = (X_validation, Y_validation)
else:
validation_data = None
# Collect constants for the model generation, add class count and feature matrix size
model_parameter_constants = {
'CLASS_COUNT': int(db.scene_label_count()),
'FEATURE_VECTOR_LENGTH': int(data_size['data']),
'INPUT_SEQUENCE_LENGTH': int(data_size['time']),
}
# Read constants from parameters
model_parameter_constants.update(
param.get_path('learner.parameters.model.constants', {})
)
# Create sequential model
keras_model = dcase_util.keras.create_sequential_model(
model_parameter_list=param.get_path('learner.parameters.model.config'),
constants=model_parameter_constants
)
# Create optimizer object
param.set_path(
path='learner.parameters.compile.optimizer',
new_value=dcase_util.keras.create_optimizer(
class_name=param.get_path('learner.parameters.optimizer.class_name'),
config=param.get_path('learner.parameters.optimizer.config')
)
)
# Compile model
keras_model.compile(
**param.get_path('learner.parameters.compile', {})
)
# Show model topology
log.line(
dcase_util.keras.model_summary_string(keras_model)
)
# Create callback list
callback_list = [
dcase_util.keras.ProgressLoggerCallback(
epochs=param.get_path('learner.parameters.fit.epochs'),
metric=param.get_path('learner.parameters.compile.metrics')[0],
loss=param.get_path('learner.parameters.compile.loss'),
output_type='logging'
)
]
if param.get_path('learner.parameters.callbacks.StopperCallback'):
# StopperCallback
callback_list.append(
dcase_util.keras.StopperCallback(
epochs=param.get_path('learner.parameters.fit.epochs'),
**param.get_path('learner.parameters.callbacks.StopperCallback', {})
)
)
if param.get_path('learner.parameters.callbacks.ProgressPlotterCallback'):
# ProgressPlotterCallback
callback_list.append(
dcase_util.keras.ProgressPlotterCallback(
epochs=param.get_path('learner.parameters.fit.epochs'),
**param.get_path('learner.parameters.callbacks.ProgressPlotterCallback', {})
)
)
if param.get_path('learner.parameters.callbacks.StasherCallback'):
# StasherCallback
callback_list.append(
dcase_util.keras.StasherCallback(
epochs=param.get_path('learner.parameters.fit.epochs'),
**param.get_path('learner.parameters.callbacks.StasherCallback', {})
)
)
# Train model
if param.get_path('learner.parameters.generator.enable'):
keras_model.fit_generator(
generator=train_data_sequence,
validation_data=validation_data_sequence,
callbacks=callback_list,
verbose=0,
epochs=param.get_path('learner.parameters.fit.epochs'),
shuffle=param.get_path('learner.parameters.fit.shuffle')
)
else:
keras_model.fit(
x=X_train,
y=Y_train,
validation_data=validation_data,
callbacks=callback_list,
verbose=0,
epochs=param.get_path('learner.parameters.fit.epochs'),
batch_size=param.get_path('learner.parameters.fit.batch_size'),
shuffle=param.get_path('learner.parameters.fit.shuffle')
)
for callback in callback_list:
if isinstance(callback, dcase_util.keras.StasherCallback):
# Fetch the best performing model
callback.log()
best_weights = callback.get_best()['weights']
if best_weights:
keras_model.set_weights(best_weights)
break
# Save model
keras_model.save(fold_model_filename)
processed_files.append(fold_model_filename)
return processed_files
def do_testing(db, scene_labels, folds, param, log, overwrite=False):
"""Testing stage
Parameters
----------
db : dcase_util.dataset.Dataset
Dataset
scene_labels : list of str
List of scene labels
folds : list
List of active folds
param : dcase_util.containers.DCASEAppParameterContainer
Application parameters
log : dcase_util.ui.FancyLogger
Logging interface
overwrite : bool
Overwrite data always
Default value False
Returns
-------
list
"""
processed_files = []
# Loop over all cross-validation folds and test
for fold in folds:
log.line(
data='Fold [{fold}]'.format(fold=fold),
indent=2
)
# Get model filename
fold_model_filename = os.path.join(
param.get_path('path.application.learner'),
'model_fold_{fold}.h5'.format(fold=fold)
)
# Initialize model to None, load when first non-tested file encountered.
keras_model = None
# Get normalization factor filename
fold_stats_filename = os.path.join(
param.get_path('path.application.feature_normalizer'),
'norm_fold_{fold}.cpickle'.format(fold=fold)
)
# Create processing chain for features
data_processing_chain = dcase_util.processors.ProcessingChain()
for chain in param.get_path('data_processing_chain.parameters.chain'):
processor_name = chain.get('processor_name')
init_parameters = chain.get('init_parameters', {})
# Inject parameters
if processor_name == 'dcase_util.processors.NormalizationProcessor':
init_parameters['filename'] = fold_stats_filename
data_processing_chain.push_processor(
processor_name=processor_name,
init_parameters=init_parameters,
)
# Get results filename
fold_results_filename = os.path.join(
param.get_path('path.application.recognizer'),
'res_fold_{fold}.txt'.format(fold=fold)
)
if not os.path.isfile(fold_results_filename) or overwrite:
# Load model if not yet loaded
if not keras_model:
dcase_util.keras.setup_keras(
seed=param.get_path('learner.parameters.random_seed'),
profile=param.get_path('learner.parameters.keras_profile'),
backend=param.get_path('learner.parameters.backend', 'tensorflow'),
print_indent=2
)
import keras
keras_model = keras.models.load_model(fold_model_filename)
# Initialize results container
res = dcase_util.containers.MetaDataContainer(
filename=fold_results_filename
)
# Loop through all test files from the current cross-validation fold
for item in db.test(fold=fold):
# Get feature filename
feature_filename = dcase_util.utils.Path(
path=item.filename
).modify(
path_base=param.get_path('path.application.feature_extractor'),
filename_extension='.cpickle'
)
features = data_processing_chain.process(
filename=feature_filename
)
input_data = features.data
if len(keras_model.input_shape) == 4:
data_format = None
if isinstance(keras_model.get_config(), list):
data_format = keras_model.get_config()[0]['config']['data_format']
elif isinstance(keras_model.get_config(), dict) and 'layers' in keras_model.get_config():
data_format = keras_model.get_config()['layers'][0]['config']['data_format']
# Add channel
if data_format == 'channels_first':
input_data = numpy.expand_dims(input_data, 0)
elif data_format == 'channels_last':
input_data = numpy.expand_dims(input_data, 3)
# Get network output
probabilities = keras_model.predict(x=input_data).T
# Binarization of the network output
frame_decisions = dcase_util.data.ProbabilityEncoder().binarization(
probabilities=probabilities,
binarization_type=param.get_path('recognizer.frame_binarization.type', 'global_threshold'),
threshold=param.get_path('recognizer.frame_binarization.threshold', 0.5)
)