v0.0.8 (2024-11-09)
Merged pull requests:
- ci(pre-commit.ci): autoupdate #85 (pre-commit-ci[bot])
- refactor: change default spectral_bins_per_emission_channel and max_psf_radius_aus #84 (tlambert03)
- allow any object with render method to be used for label distribution #83 (tlambert03)
v0.0.7 (2024-10-03)
Implemented enhancements:
- feat: scaling each light source by the respective power #79 (federico-carrara)
- feat: adding Identity PSF modality #78 (federico-carrara)
Merged pull requests:
- ci(pre-commit.ci): autoupdate #76 (pre-commit-ci[bot])
v0.0.6 (2024-09-10)
Merged pull requests:
- fix: fix key again #77 (tlambert03)
- fix: typos #75 (tlambert03)
- refactor: rewrite simulation stages, improve optical config spectral considerations #74 (tlambert03)
- ci(pre-commit.ci): autoupdate #72 (pre-commit-ci[bot])
- refactor: remove pint from models #71 (tlambert03)
- Fix cosem images download error #69 (veegalinova)
- fix: allowing None type for 'CosemDataset' attributes #67 (federico-carrara)
- Implementing Illumination/Irradiance as a (W, C, Z, Y, X) array #63 (federico-carrara)
- ci(pre-commit.ci): autoupdate #60 (pre-commit-ci[bot])
v0.0.5 (2024-07-08)
Merged pull requests:
- fix: fix cosem fetch #65 (tlambert03)
- Documentation for excitation and emission code + a bug fix. #59 (ashesh-0)
- add init_forbid_extra in pydantic.mypy settings #58 (tlambert03)
- fix: fixed typo (from 'placemen' to 'placement') #57 (federico-carrara)
v0.0.4 (2024-06-20)
Fixed bugs:
- fix: fix for redhat #56 (tlambert03)
v0.0.3 (2024-06-17)
Implemented enhancements:
- feat: pull neuron ground truths from allen brain #48 (tlambert03)
- feat: support multi-channel, multi-fluorophore simulations #35 (ashesh-0)
Merged pull requests:
- fix: remove caching on bins #53 (tlambert03)
- build: pin numpy to <2 until next tensorstore release #51 (tlambert03)
- feat: add cosem models, downloading, caching, binning, and tests #50 (tlambert03)
- feat: add ndview convenience #49 (tlambert03)
- docs: Overview of various stages. #46 (tlambert03)
- ci: try self-hosted for cupy #45 (tlambert03)
- Establish dimension conventions, pass dimensions through more explicitly #44 (tlambert03)
- refactor: remove DataArray, use xarray directly, vendor xarray_jax from deepmind/graphcast #43 (tlambert03)
- ci(pre-commit.ci): autoupdate #42 (pre-commit-ci[bot])
- feat: add caching #41 (tlambert03)
- feat: allow loading optical configs from fpbase, general refactor of optical configs #40 (tlambert03)
- feat: cosem Sample #18 (tlambert03)
v0.0.2 (2024-05-28)
Merged pull requests:
- fix cupy #38 (tlambert03)
- feat: add pint quantities to more fields #37 (tlambert03)
- feat: establish some general Annotated[..., Validator()] patterns. add
Fluorophore.from_fpbase#36 (tlambert03) - feat: add emission event example, and add lifetime to state from fpbase, test examples #34 (tlambert03)
- feat: add direct from ground truth #32 (tlambert03)
- feat: swappable fft backends, including torch and jax #30 (tlambert03)
v0.0.1 (2024-05-07)
Merged pull requests:
- feat: higher level psf caching #28 (tlambert03)
- Update ci, prep for release to pypi #27 (tlambert03)
- feat: cache psf #26 (tlambert03)
- ci(pre-commit.ci): autoupdate #24 (pre-commit-ci[bot])
- feat: use SimBaseModel and add float precision setting #19 (tlambert03)
- cosem and cleanup #17 (tlambert03)
- Smaller psf #16 (tlambert03)
- ci(dependabot): bump codecov/codecov-action from 3 to 4 #15 (dependabot[bot])
- ci(dependabot): bump actions/setup-python from 4 to 5 #14 (dependabot[bot])
- ci(dependabot): bump softprops/action-gh-release from 1 to 2 #13 (dependabot[bot])
- Reorganize code #12 (tlambert03)
- Fix import and formatting issues in multiple files #11 (tlambert03)
- update precommit #7 (tlambert03)
- use mypyc for bresenham #6 (tlambert03)
* This Changelog was automatically generated by github_changelog_generator