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dataset structure #23

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pervinh opened this issue Mar 8, 2019 · 1 comment
Open

dataset structure #23

pervinh opened this issue Mar 8, 2019 · 1 comment

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@pervinh
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pervinh commented Mar 8, 2019

Can you tell me how dataset folder should look like? Mine looks like:

--\data
----\dataset
-------\BRATS2018
-----------\training
---------------\HGG
-------------------HGG147_Flair.nii
-------------------HGG147_Label.nii
-------------------HGG147_T1nii
-------------------HGG147_T1c.nii
-------------------HGG147_T2.nii
---------------\LGG
-------------------LGG71_Flair.nii
-------------------LGG71_Label.nii
-------------------LGG71_T1nii
-------------------LGG71_T1c.nii
-------------------LGG71_T2.nii

But i get an error:

$ python preprocess.py                                                          
Processing HGG ...                                                               
0it [00:00, ?it/s]                                                               
Processing LGG ...                                                              
0it [00:00, ?it/s]
@tkuanlun350
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For example:
ls dataset/BRATS2018/training/HGG/Brats18_2013_10_1/
=> Brats18_2013_10_1_flair.nii.gz Brats18_2013_10_1_seg.nii.gz Brats18_2013_10_1_t1ce.nii.gz Brats18_2013_10_1_t1.nii.gz Brats18_2013_10_1_t2.nii.gz

You can also modify dataloader.py to suit your need.

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@tkuanlun350 @pervinh