Skip to content

Commit

Permalink
removed normalise option from estimate_response (which is commented out
Browse files Browse the repository at this point in the history
anyway) because it doesn't seem to be working as I thought it would.
  • Loading branch information
Tom Close committed Dec 25, 2012
1 parent a6f8358 commit 063ef87
Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion bash/get_dw_response
Original file line number Diff line number Diff line change
Expand Up @@ -38,7 +38,7 @@ gen_WM_mask $dwi_file ${pfx}mask.mif - | threshold - ${pfx}wm_mask.mif -abs $WM_
dwi2tensor $dwi_file - | tensor2FA - - | mrmult - ${pfx}wm_mask.mif - | threshold - ${pfx}sf_mask.mif -abs $SF_FA_THRESHOLD

# Mask single_fibre mask with whole brain mask
#estimate_response $dwi_file ${pfx}sf_mask.mif $output -lmax 8 -normalise
#estimate_response $dwi_file ${pfx}sf_mask.mif $output -lmax 8

# Save the average b0 to file for use in scaling the base intensity of the expected image
get_b0 $dwi_file ${pfx}sf_mask.mif -method median > ${output_base}.b0.$output_ext
Expand Down

0 comments on commit 063ef87

Please sign in to comment.