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<!DOCTYPE html>
<html lang="" xml:lang="">
<head>
<title>Open source water quality reporting tools for the PEP Monitoring Collaborative</title>
<meta charset="utf-8" />
<meta name="author" content="Dr. Marcus Beck \bullet @fawda123 \bullet #TampaBayOpensci" />
<meta name="date" content="2020-10-19" />
<link href="libs/anchor-sections-1.0/anchor-sections.css" rel="stylesheet" />
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class: center, middle, inverse, title-slide
# Open source water quality reporting tools for the PEP Monitoring Collaborative
### <a href="mailto:[email protected]">Dr. Marcus Beck</a> <span class="math inline">•</span> <a href="https://twitter.com/fawda123">@fawda123</a> <span class="math inline">•</span> <a href="https://twitter.com/hashtag/TampaBayOpenSci?src=hashtag_click">#TampaBayOpensci</a>
### Tampa Bay Estuary Program
### 10/19/2020
---
class: left, top
.center[
## AGENDA FOR TODAY
]
1. Overview of open science philosophy
1. Application to TBEP and partner reporting products
1. Tech transfer to other NEPs
1. PEP reporting tools: `peptools` R package
1. Discussion, next steps
---
class: left, top
.center[
## GOALS FOR TODAY
]
1. Vibe check: do we like these approaches?
1. Are there additional tools to add?
1. How could the Monitoring Collaborative use these tools?
--
<h3 style="text-align: center;">
We are not revisiting past decisions, but understanding how the tools use these decisions and could be used to answer future questions!
</h3>
---
class: middle, center
# Open Science: why, what, and how
---
class: middle, center
## The research-management divide
<img src="figure/divide2.png" width="100%" style="display: block; margin: auto;" />
---
class: middle, center
<img src="figure/michener.png" width="90%" style="display: block; margin: auto;" />
.footnote[[Michener et al. 1997 Ecol. App. 7(1):330-342.](https://www.researchgate.net/publication/246959596_Nongeospatial_Metadata_for_the_Ecological_Sciences)]
---
class: middle, center
## Open science can bridge this divide
<img src="figure/bridge.png" width="100%" style="display: block; margin: auto;" />
---
class: middle, center
<img src="figure/fiveschools.PNG" width="85%" style="display: block; margin: auto;" />
.footnote[[Fecher and Friesike 2014. Opening Science, Springer.](https://doi.org/10.1007/978-3-319-00026-8_2)]
---
class: middle, center
### The practice of science in such a way that others can **collaborate** and **contribute**, where research data, lab notes and other research processes are **freely available**, under terms that enable **reuse**, **redistribution** and **reproduction** of the research and its underlying data and methods
.footnote[Open Knowledge International, [http://opendefinition.org/](http://opendefinition.org/), [https://creativecommons.org/](https://creativecommons.org/about/program-areas/open-science/)]
--
### Data are __F__indable, __A__ccessible, __I__nteroperable, and __R__esuable
.footnote[[Wilkinson et al. 2016 Nature 3:160018](https://doi.org/10.1038/sdata.2016.18)]
---
class: top, center
## OPEN SCIENCE AT TBEP
.pull-left[
<img src="figure/wqstatic1.PNG" width="100%" style="display: block; margin: auto;" />
]
.pull-right[
<img src="figure/wqstatic2.PNG" width="100%" style="display: block; margin: auto;" />
]
---
class: top, center
## THE OLD WAY
<img src="figure/badflow2.png" width="100%" style="display: block; margin: auto;" />
---
class: top, center
## THE NEW WAY
<img src="figure/flow3.png" width="100%" style="display: block; margin: auto;" />
---
class: left, top
.center[
## `TBEPTOOLS` R PACKAGE
]
* Import raw data, estimate indicators, and report outcomes
* Foundational methods for indicator reporting
* Freely available on GitHub for anyone to view source code, download for use, and make requests for additions
<img src="figure/tbeptoolshex.png" width="20%" style="display: block; margin: auto;" />
---
class: top, center
## WEBSITE
<img src="figure/tbeptools.PNG" width="100%" style="display: block; margin: auto;" />
[https://tbep-tech.github.io/tbeptools/](https://tbep-tech.github.io/tbeptools)
---
class: top, center
## FUNCTION REFERENCES
<img src="figure/tbeptoolsref.PNG" width="100%" style="display: block; margin: auto;" />
---
class: top, center
## DOCUMENTATION
<img src="figure/tbeptoolsdoc.PNG" width="100%" style="display: block; margin: auto;" />
---
class: top, center
## VIGNETTES
<img src="figure/tbeptoolsvig.PNG" width="100%" style="display: block; margin: auto;" />
---
class: top, center
## SOURCE CODE
<img src="figure/tbeptoolssrc.PNG" width="100%" style="display: block; margin: auto;" />
---
class: middle, left
.center[
## IT'S SUPER SIMPLE...
]
```r
library(tbeptools)
xlsx <- 'data/2019_Results_updated.xls'
ecpdata <- read_importwq(xlsx)
show_thrplot(epcdata, bay_segment = "OTB", thr = "chla")
```
<img src="peptools_files/figure-html/unnamed-chunk-16-1.png" width="100%" style="display: block; margin: auto;" />
---
class: left, top
.center[
## TECH TRANSFER
]
<img src="figure/repetitive.png" width="90%" style="display: block; margin: auto;" />
---
class: left, top
.center[
## TECH TRANSFER
]
* No need to reinvent the wheel!
--
* Leverage other methods (technical foundation) AND tools (analysis workflows) using FAIR principles
--
* Increase collaboration among NEPs, we are a community that should be open and learn from each other
---
class: center, top
## `peptools` R PACKAGE
<img src="figure/pepintro.PNG" width="100%" style="display: block; margin: auto;" />
.footenote[[https://tbep-tech.github.io/peptools/](https://tbep-tech.github.io/peptools/)]
---
class: center, top
## `peptools` R PACKAGE
<img src="figure/pepfuncs.PNG" width="90%" style="display: block; margin: auto;" />
---
class: left, top
.center[
## PAST DECISIONS
]
* Consider existing LTM datasets that can be used to assess progress in attaining CCMP goals (*Goal: Clean Waters*)
--
* Spatial divisions of Peconic Estuary for applying numeric thresholds
--
* Relevant thresholds and how to quantify (median vs. mean)
--
* Stoplight graphic for public-facing documents, update annually
---
class: left, top
.center[
## IT'S SUPER SIMPLE...
]
```r
library(peptools)
dat <- read_pepwq('data/currentdata.xlsx')
show_thrpep(dat, bay_segment = "Western", param = "chla")
```
<img src="peptools_files/figure-html/unnamed-chunk-20-1.png" width="100%" style="display: block; margin: auto;" />
---
class: left, top
.center[
## EXISTING DATA
]
```r
locs <- st_as_sf(pepstations, coords = c('Longitude', 'Latitude'), crs = 4326)
mapview(locs, zcol = 'bay_segment', layer.name = 'Bay segment')
```
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ID <\/b><\/th><td>3 <\/td><\/tr><tr><td>1<\/td><th>BayStation <\/th><td>60270 <\/td><\/tr><tr><td>2<\/td><th>StationName <\/th><td>Peconic River <\/td><\/tr><tr><td>3<\/td><th>bay_segment <\/th><td>Western <\/td><\/tr><tr><td>4<\/td><th>geometry <\/th><td>sfc_POINT <\/td><\/tr><\/table><\/div>","<div class='scrollableContainer'><table class= id='popup'><tr class='coord'><td><\/td><th><b>Feature ID <\/b><\/th><td>4 <\/td><\/tr><tr><td>1<\/td><th>BayStation <\/th><td>60265 <\/td><\/tr><tr><td>2<\/td><th>StationName <\/th><td>Peconic River <\/td><\/tr><tr><td>3<\/td><th>bay_segment <\/th><td>Western <\/td><\/tr><tr><td>4<\/td><th>geometry <\/th><td>sfc_POINT <\/td><\/tr><\/table><\/div>","<div class='scrollableContainer'><table class= id='popup'><tr class='coord'><td><\/td><th><b>Feature ID <\/b><\/th><td>5 <\/td><\/tr><tr><td>1<\/td><th>BayStation <\/th><td>60266 <\/td><\/tr><tr><td>2<\/td><th>StationName <\/th><td>Peconic River <\/td><\/tr><tr><td>3<\/td><th>bay_segment <\/th><td>Western <\/td><\/tr><tr><td>4<\/td><th>geometry <\/th><td>sfc_POINT <\/td><\/tr><\/table><\/div>","<div class='scrollableContainer'><table class= id='popup'><tr class='coord'><td><\/td><th><b>Feature ID <\/b><\/th><td>6 <\/td><\/tr><tr><td>1<\/td><th>BayStation <\/th><td>60260 <\/td><\/tr><tr><td>2<\/td><th>StationName <\/th><td>Peconic River <\/td><\/tr><tr><td>3<\/td><th>bay_segment <\/th><td>Western <\/td><\/tr><tr><td>4<\/td><th>geometry <\/th><td>sfc_POINT <\/td><\/tr><\/table><\/div>","<div class='scrollableContainer'><table class= id='popup'><tr class='coord'><td><\/td><th><b>Feature ID <\/b><\/th><td>7 <\/td><\/tr><tr><td>1<\/td><th>BayStation <\/th><td>60250 <\/td><\/tr><tr><td>2<\/td><th>StationName <\/th><td>Sawmill Creek <\/td><\/tr><tr><td>3<\/td><th>bay_segment <\/th><td>Western <\/td><\/tr><tr><td>4<\/td><th>geometry <\/th><td>sfc_POINT <\/td><\/tr><\/table><\/div>","<div class='scrollableContainer'><table class= id='popup'><tr class='coord'><td><\/td><th><b>Feature ID <\/b><\/th><td>8 <\/td><\/tr><tr><td>1<\/td><th>BayStation <\/th><td>60240 <\/td><\/tr><tr><td>2<\/td><th>StationName <\/th><td>Peconic River Mouth <\/td><\/tr><tr><td>3<\/td><th>bay_segment <\/th><td>Western <\/td><\/tr><tr><td>4<\/td><th>geometry <\/th><td>sfc_POINT <\/td><\/tr><\/table><\/div>","<div class='scrollableContainer'><table class= id='popup'><tr class='coord'><td><\/td><th><b>Feature ID <\/b><\/th><td>9 <\/td><\/tr><tr><td>1<\/td><th>BayStation <\/th><td>60230 <\/td><\/tr><tr><td>2<\/td><th>StationName <\/th><td>Terrys Creek <\/td><\/tr><tr><td>3<\/td><th>bay_segment <\/th><td>Western <\/td><\/tr><tr><td>4<\/td><th>geometry <\/th><td>sfc_POINT <\/td><\/tr><\/table><\/div>","<div class='scrollableContainer'><table class= id='popup'><tr class='coord'><td><\/td><th><b>Feature ID <\/b><\/th><td>10 <\/td><\/tr><tr><td>1<\/td><th>BayStation <\/th><td>60210 <\/td><\/tr><tr><td>2<\/td><th>StationName <\/th><td>Reeves Bay <\/td><\/tr><tr><td>3<\/td><th>bay_segment <\/th><td>Western <\/td><\/tr><tr><td>4<\/td><th>geometry <\/th><td>sfc_POINT <\/td><\/tr><\/table><\/div>","<div class='scrollableContainer'><table class= id='popup'><tr class='coord'><td><\/td><th><b>Feature ID <\/b><\/th><td>11 <\/td><\/tr><tr><td>1<\/td><th>BayStation <\/th><td>60220 <\/td><\/tr><tr><td>2<\/td><th>StationName <\/th><td>Meetinghouse Creek <\/td><\/tr><tr><td>3<\/td><th>bay_segment <\/th><td>Western <\/td><\/tr><tr><td>4<\/td><th>geometry <\/th><td>sfc_POINT <\/td><\/tr><\/table><\/div>","<div class='scrollableContainer'><table class= id='popup'><tr class='coord'><td><\/td><th><b>Feature ID <\/b><\/th><td>12 <\/td><\/tr><tr><td>1<\/td><th>BayStation <\/th><td>60170 <\/td><\/tr><tr><td>2<\/td><th>StationName <\/th><td>Flanders Bay <\/td><\/tr><tr><td>3<\/td><th>bay_segment <\/th><td>Western <\/td><\/tr><tr><td>4<\/td><th>geometry <\/th><td>sfc_POINT <\/td><\/tr><\/table><\/div>","<div class='scrollableContainer'><table class= id='popup'><tr class='coord'><td><\/td><th><b>Feature ID <\/b><\/th><td>13 <\/td><\/tr><tr><td>1<\/td><th>BayStation <\/th><td>60101 <\/td><\/tr><tr><td>2<\/td><th>StationName <\/th><td>East Creek (South Jamesport) <\/td><\/tr><tr><td>3<\/td><th>bay_segment <\/th><td>Western <\/td><\/tr><tr><td>4<\/td><th>geometry <\/th><td>sfc_POINT <\/td><\/tr><\/table><\/div>","<div class='scrollableContainer'><table class= id='popup'><tr class='coord'><td><\/td><th><b>Feature ID <\/b><\/th><td>14 <\/td><\/tr><tr><td>1<\/td><th>BayStation <\/th><td>60130 <\/td><\/tr><tr><td>2<\/td><th>StationName <\/th><td>Great Peconic Bay <\/td><\/tr><tr><td>3<\/td><th>bay_segment <\/th><td>Western <\/td><\/tr><tr><td>4<\/td><th>geometry <\/th><td>sfc_POINT <\/td><\/tr><\/table><\/div>","<div class='scrollableContainer'><table class= id='popup'><tr class='coord'><td><\/td><th><b>Feature ID <\/b><\/th><td>15 <\/td><\/tr><tr><td>1<\/td><th>BayStation <\/th><td>60290 <\/td><\/tr><tr><td>2<\/td><th>StationName <\/th><td>Cold Spring Pond <\/td><\/tr><tr><td>3<\/td><th>bay_segment <\/th><td>Western <\/td><\/tr><tr><td>4<\/td><th>geometry <\/th><td>sfc_POINT <\/td><\/tr><\/table><\/div>","<div class='scrollableContainer'><table class= id='popup'><tr class='coord'><td><\/td><th><b>Feature ID <\/b><\/th><td>16 <\/td><\/tr><tr><td>1<\/td><th>BayStation <\/th><td>60148 <\/td><\/tr><tr><td>2<\/td><th>StationName <\/th><td>Bullhead Bay <\/td><\/tr><tr><td>3<\/td><th>bay_segment <\/th><td>Western <\/td><\/tr><tr><td>4<\/td><th>geometry <\/th><td>sfc_POINT <\/td><\/tr><\/table><\/div>","<div class='scrollableContainer'><table class= id='popup'><tr class='coord'><td><\/td><th><b>Feature ID <\/b><\/th><td>17 <\/td><\/tr><tr><td>1<\/td><th>BayStation <\/th><td>60102 <\/td><\/tr><tr><td>2<\/td><th>StationName <\/th><td>Cutchogue Harbor <\/td><\/tr><tr><td>3<\/td><th>bay_segment <\/th><td>Central <\/td><\/tr><tr><td>4<\/td><th>geometry <\/th><td>sfc_POINT <\/td><\/tr><\/table><\/div>","<div class='scrollableContainer'><table class= id='popup'><tr class='coord'><td><\/td><th><b>Feature ID <\/b><\/th><td>18 <\/td><\/tr><tr><td>1<\/td><th>BayStation <\/th><td>60103 <\/td><\/tr><tr><td>2<\/td><th>StationName <\/th><td>East Creek (Cutchogue) <\/td><\/tr><tr><td>3<\/td><th>bay_segment <\/th><td>Central <\/td><\/tr><tr><td>4<\/td><th>geometry <\/th><td>sfc_POINT <\/td><\/tr><\/table><\/div>","<div class='scrollableContainer'><table class= id='popup'><tr class='coord'><td><\/td><th><b>Feature ID <\/b><\/th><td>19 <\/td><\/tr><tr><td>1<\/td><th>BayStation <\/th><td>60113 <\/td><\/tr><tr><td>2<\/td><th>StationName <\/th><td>Little Peconic Bay <\/td><\/tr><tr><td>3<\/td><th>bay_segment <\/th><td>Central <\/td><\/tr><tr><td>4<\/td><th>geometry <\/th><td>sfc_POINT <\/td><\/tr><\/table><\/div>","<div class='scrollableContainer'><table class= id='popup'><tr class='coord'><td><\/td><th><b>Feature ID <\/b><\/th><td>20 <\/td><\/tr><tr><td>1<\/td><th>BayStation <\/th><td>60104 <\/td><\/tr><tr><td>2<\/td><th>StationName <\/th><td>North Sea Harbor <\/td><\/tr><tr><td>3<\/td><th>bay_segment <\/th><td>Central <\/td><\/tr><tr><td>4<\/td><th>geometry <\/th><td>sfc_POINT <\/td><\/tr><\/table><\/div>","<div class='scrollableContainer'><table class= id='popup'><tr class='coord'><td><\/td><th><b>Feature ID <\/b><\/th><td>21 <\/td><\/tr><tr><td>1<\/td><th>BayStation <\/th><td>60300 <\/td><\/tr><tr><td>2<\/td><th>StationName <\/th><td>Wooley Pond <\/td><\/tr><tr><td>3<\/td><th>bay_segment <\/th><td>Central <\/td><\/tr><tr><td>4<\/td><th>geometry <\/th><td>sfc_POINT <\/td><\/tr><\/table><\/div>","<div class='scrollableContainer'><table class= id='popup'><tr class='coord'><td><\/td><th><b>Feature ID <\/b><\/th><td>22 <\/td><\/tr><tr><td>1<\/td><th>BayStation <\/th><td>60105 <\/td><\/tr><tr><td>2<\/td><th>StationName <\/th><td>Hog Neck Bay North <\/td><\/tr><tr><td>3<\/td><th>bay_segment <\/th><td>Central <\/td><\/tr><tr><td>4<\/td><th>geometry <\/th><td>sfc_POINT <\/td><\/tr><\/table><\/div>","<div class='scrollableContainer'><table class= id='popup'><tr class='coord'><td><\/td><th><b>Feature ID <\/b><\/th><td>23 <\/td><\/tr><tr><td>1<\/td><th>BayStation <\/th><td>60106 <\/td><\/tr><tr><td>2<\/td><th>StationName <\/th><td>Goose Creek <\/td><\/tr><tr><td>3<\/td><th>bay_segment <\/th><td>Central <\/td><\/tr><tr><td>4<\/td><th>geometry <\/th><td>sfc_POINT <\/td><\/tr><\/table><\/div>","<div class='scrollableContainer'><table class= id='popup'><tr class='coord'><td><\/td><th><b>Feature ID <\/b><\/th><td>24 <\/td><\/tr><tr><td>1<\/td><th>BayStation <\/th><td>60107 <\/td><\/tr><tr><td>2<\/td><th>StationName <\/th><td>Town Creek <\/td><\/tr><tr><td>3<\/td><th>bay_segment <\/th><td>Central <\/td><\/tr><tr><td>4<\/td><th>geometry <\/th><td>sfc_POINT <\/td><\/tr><\/table><\/div>","<div class='scrollableContainer'><table class= id='popup'><tr class='coord'><td><\/td><th><b>Feature ID <\/b><\/th><td>25 <\/td><\/tr><tr><td>1<\/td><th>BayStation <\/th><td>60310 <\/td><\/tr><tr><td>2<\/td><th>StationName <\/th><td>Noyac Creek <\/td><\/tr><tr><td>3<\/td><th>bay_segment <\/th><td>Central <\/td><\/tr><tr><td>4<\/td><th>geometry <\/th><td>sfc_POINT <\/td><\/tr><\/table><\/div>","<div class='scrollableContainer'><table class= id='popup'><tr class='coord'><td><\/td><th><b>Feature ID <\/b><\/th><td>26 <\/td><\/tr><tr><td>1<\/td><th>BayStation <\/th><td>60320 <\/td><\/tr><tr><td>2<\/td><th>StationName <\/th><td>Mill Creek <\/td><\/tr><tr><td>3<\/td><th>bay_segment <\/th><td>Central <\/td><\/tr><tr><td>4<\/td><th>geometry <\/th><td>sfc_POINT <\/td><\/tr><\/table><\/div>","<div class='scrollableContainer'><table class= id='popup'><tr class='coord'><td><\/td><th><b>Feature ID <\/b><\/th><td>27 <\/td><\/tr><tr><td>1<\/td><th>BayStation <\/th><td>60114 <\/td><\/tr><tr><td>2<\/td><th>StationName <\/th><td>Paradise Point <\/td><\/tr><tr><td>3<\/td><th>bay_segment <\/th><td>Central <\/td><\/tr><tr><td>4<\/td><th>geometry <\/th><td>sfc_POINT <\/td><\/tr><\/table><\/div>","<div class='scrollableContainer'><table class= id='popup'><tr class='coord'><td><\/td><th><b>Feature ID <\/b><\/th><td>28 <\/td><\/tr><tr><td>1<\/td><th>BayStation <\/th><td>60109 <\/td><\/tr><tr><td>2<\/td><th>StationName <\/th><td>Mill Creek (Hashamomuck Pond) <\/td><\/tr><tr><td>3<\/td><th>bay_segment <\/th><td>Central <\/td><\/tr><tr><td>4<\/td><th>geometry <\/th><td>sfc_POINT <\/td><\/tr><\/table><\/div>","<div class='scrollableContainer'><table class= id='popup'><tr class='coord'><td><\/td><th><b>Feature ID <\/b><\/th><td>29 <\/td><\/tr><tr><td>1<\/td><th>BayStation <\/th><td>60340 <\/td><\/tr><tr><td>2<\/td><th>StationName <\/th><td>Hashamomuck Pond 1 <\/td><\/tr><tr><td>3<\/td><th>bay_segment <\/th><td>Central <\/td><\/tr><tr><td>4<\/td><th>geometry <\/th><td>sfc_POINT <\/td><\/tr><\/table><\/div>","<div class='scrollableContainer'><table class= id='popup'><tr class='coord'><td><\/td><th><b>Feature ID <\/b><\/th><td>30 <\/td><\/tr><tr><td>1<\/td><th>BayStation <\/th><td>60121 <\/td><\/tr><tr><td>2<\/td><th>StationName <\/th><td>Noyac Bay <\/td><\/tr><tr><td>3<\/td><th>bay_segment <\/th><td>Central <\/td><\/tr><tr><td>4<\/td><th>geometry <\/th><td>sfc_POINT <\/td><\/tr><\/table><\/div>","<div class='scrollableContainer'><table class= id='popup'><tr class='coord'><td><\/td><th><b>Feature ID <\/b><\/th><td>31 <\/td><\/tr><tr><td>1<\/td><th>BayStation <\/th><td>60124 <\/td><\/tr><tr><td>2<\/td><th>StationName <\/th><td>West Neck Harbor <\/td><\/tr><tr><td>3<\/td><th>bay_segment <\/th><td>Central <\/td><\/tr><tr><td>4<\/td><th>geometry <\/th><td>sfc_POINT <\/td><\/tr><\/table><\/div>","<div class='scrollableContainer'><table class= id='popup'><tr class='coord'><td><\/td><th><b>Feature ID <\/b><\/th><td>32 <\/td><\/tr><tr><td>1<\/td><th>BayStation <\/th><td>60119 <\/td><\/tr><tr><td>2<\/td><th>StationName <\/th><td>West Neck Bay <\/td><\/tr><tr><td>3<\/td><th>bay_segment <\/th><td>Central <\/td><\/tr><tr><td>4<\/td><th>geometry <\/th><td>sfc_POINT <\/td><\/tr><\/table><\/div>","<div class='scrollableContainer'><table class= id='popup'><tr class='coord'><td><\/td><th><b>Feature ID <\/b><\/th><td>33 <\/td><\/tr><tr><td>1<\/td><th>BayStation <\/th><td>60127 <\/td><\/tr><tr><td>2<\/td><th>StationName <\/th><td>Sag Harbor Cove <\/td><\/tr><tr><td>3<\/td><th>bay_segment <\/th><td>Central <\/td><\/tr><tr><td>4<\/td><th>geometry <\/th><td>sfc_POINT <\/td><\/tr><\/table><\/div>","<div class='scrollableContainer'><table class= id='popup'><tr class='coord'><td><\/td><th><b>Feature ID <\/b><\/th><td>34 <\/td><\/tr><tr><td>1<\/td><th>BayStation <\/th><td>60126 <\/td><\/tr><tr><td>2<\/td><th>StationName <\/th><td>Sag Harbor <\/td><\/tr><tr><td>3<\/td><th>bay_segment <\/th><td>Eastern <\/td><\/tr><tr><td>4<\/td><th>geometry <\/th><td>sfc_POINT <\/td><\/tr><\/table><\/div>","<div class='scrollableContainer'><table class= id='popup'><tr class='coord'><td><\/td><th><b>Feature ID <\/b><\/th><td>35 <\/td><\/tr><tr><td>1<\/td><th>BayStation <\/th><td>60111 <\/td><\/tr><tr><td>2<\/td><th>StationName <\/th><td>Greenport Harbor <\/td><\/tr><tr><td>3<\/td><th>bay_segment <\/th><td>Eastern <\/td><\/tr><tr><td>4<\/td><th>geometry <\/th><td>sfc_POINT <\/td><\/tr><\/table><\/div>","<div class='scrollableContainer'><table class= id='popup'><tr class='coord'><td><\/td><th><b>Feature ID <\/b><\/th><td>36 <\/td><\/tr><tr><td>1<\/td><th>BayStation <\/th><td>60122 <\/td><\/tr><tr><td>2<\/td><th>StationName <\/th><td>Coecles Harbor <\/td><\/tr><tr><td>3<\/td><th>bay_segment <\/th><td>Eastern <\/td><\/tr><tr><td>4<\/td><th>geometry <\/th><td>sfc_POINT <\/td><\/tr><\/table><\/div>","<div class='scrollableContainer'><table class= id='popup'><tr class='coord'><td><\/td><th><b>Feature ID <\/b><\/th><td>37 <\/td><\/tr><tr><td>1<\/td><th>BayStation <\/th><td>60131 <\/td><\/tr><tr><td>2<\/td><th>StationName <\/th><td>Northwest Creek <\/td><\/tr><tr><td>3<\/td><th>bay_segment <\/th><td>Eastern <\/td><\/tr><tr><td>4<\/td><th>geometry <\/th><td>sfc_POINT <\/td><\/tr><\/table><\/div>","<div class='scrollableContainer'><table class= id='popup'><tr class='coord'><td><\/td><th><b>Feature ID <\/b><\/th><td>38 <\/td><\/tr><tr><td>1<\/td><th>BayStation <\/th><td>60118 <\/td><\/tr><tr><td>2<\/td><th>StationName <\/th><td>Northwest Harbor <\/td><\/tr><tr><td>3<\/td><th>bay_segment <\/th><td>Eastern <\/td><\/tr><tr><td>4<\/td><th>geometry <\/th><td>sfc_POINT <\/td><\/tr><\/table><\/div>","<div class='scrollableContainer'><table class= id='popup'><tr class='coord'><td><\/td><th><b>Feature ID <\/b><\/th><td>39 <\/td><\/tr><tr><td>1<\/td><th>BayStation <\/th><td>60115 <\/td><\/tr><tr><td>2<\/td><th>StationName <\/th><td>Orient Harbor <\/td><\/tr><tr><td>3<\/td><th>bay_segment <\/th><td>Eastern <\/td><\/tr><tr><td>4<\/td><th>geometry <\/th><td>sfc_POINT <\/td><\/tr><\/table><\/div>","<div class='scrollableContainer'><table class= id='popup'><tr class='coord'><td><\/td><th><b>Feature ID <\/b><\/th><td>40 <\/td><\/tr><tr><td>1<\/td><th>BayStation <\/th><td>60116 <\/td><\/tr><tr><td>2<\/td><th>StationName <\/th><td>Gardiner's Bay West <\/td><\/tr><tr><td>3<\/td><th>bay_segment <\/th><td>Eastern <\/td><\/tr><tr><td>4<\/td><th>geometry <\/th><td>sfc_POINT <\/td><\/tr><\/table><\/div>","<div class='scrollableContainer'><table class= id='popup'><tr class='coord'><td><\/td><th><b>Feature ID <\/b><\/th><td>41 <\/td><\/tr><tr><td>1<\/td><th>BayStation <\/th><td>60330 <\/td><\/tr><tr><td>2<\/td><th>StationName <\/th><td>Hallocks Bay <\/td><\/tr><tr><td>3<\/td><th>bay_segment <\/th><td>Eastern <\/td><\/tr><tr><td>4<\/td><th>geometry <\/th><td>sfc_POINT <\/td><\/tr><\/table><\/div>","<div class='scrollableContainer'><table class= id='popup'><tr class='coord'><td><\/td><th><b>Feature ID <\/b><\/th><td>42 <\/td><\/tr><tr><td>1<\/td><th>BayStation <\/th><td>60132 <\/td><\/tr><tr><td>2<\/td><th>StationName <\/th><td>Three Mile Harbor <\/td><\/tr><tr><td>3<\/td><th>bay_segment <\/th><td>Eastern <\/td><\/tr><tr><td>4<\/td><th>geometry <\/th><td>sfc_POINT <\/td><\/tr><\/table><\/div>","<div class='scrollableContainer'><table class= id='popup'><tr class='coord'><td><\/td><th><b>Feature ID <\/b><\/th><td>43 <\/td><\/tr><tr><td>1<\/td><th>BayStation <\/th><td>60137 <\/td><\/tr><tr><td>2<\/td><th>StationName <\/th><td>Gardiner's Bay 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---
class: left, top
.center[
## EXISTING DATA
]
```r
show_sitemappep(dat, yrsel = 2019, param = 'sd')
```
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Harbor <\/td><\/tr><tr><td>3<\/td><th>bay_segment <\/th><td>Central <\/td><\/tr><tr><td>4<\/td><th>yr <\/th><td>2019 <\/td><\/tr><tr><td>5<\/td><th>val <\/th><td> 6.50 <\/td><\/tr><tr><td>6<\/td><th>val2 <\/th><td> 6.50 <\/td><\/tr><tr><td>7<\/td><th>cexs <\/th><td> 9.68750 <\/td><\/tr><tr><td>8<\/td><th>geometry <\/th><td>sfc_POINT <\/td><\/tr><\/table><\/div>","<div class='scrollableContainer'><table class= id='popup'><tr class='coord'><td><\/td><th><b>Feature ID <\/b><\/th><td>15 <\/td><\/tr><tr><td>1<\/td><th>BayStation <\/th><td>60103 <\/td><\/tr><tr><td>2<\/td><th>StationName <\/th><td>East Creek (Cutchogue) <\/td><\/tr><tr><td>3<\/td><th>bay_segment <\/th><td>Central <\/td><\/tr><tr><td>4<\/td><th>yr <\/th><td>2019 <\/td><\/tr><tr><td>5<\/td><th>val <\/th><td> 6.00 <\/td><\/tr><tr><td>6<\/td><th>val2 <\/th><td> 6.00 <\/td><\/tr><tr><td>7<\/td><th>cexs <\/th><td>10.50000 <\/td><\/tr><tr><td>8<\/td><th>geometry <\/th><td>sfc_POINT <\/td><\/tr><\/table><\/div>","<div class='scrollableContainer'><table class= id='popup'><tr class='coord'><td><\/td><th><b>Feature ID <\/b><\/th><td>16 <\/td><\/tr><tr><td>1<\/td><th>BayStation <\/th><td>60113 <\/td><\/tr><tr><td>2<\/td><th>StationName <\/th><td>Little Peconic Bay <\/td><\/tr><tr><td>3<\/td><th>bay_segment <\/th><td>Central <\/td><\/tr><tr><td>4<\/td><th>yr <\/th><td>2019 <\/td><\/tr><tr><td>5<\/td><th>val <\/th><td>10.00 <\/td><\/tr><tr><td>6<\/td><th>val2 <\/th><td>10.00 <\/td><\/tr><tr><td>7<\/td><th>cexs <\/th><td> 4.00000 <\/td><\/tr><tr><td>8<\/td><th>geometry <\/th><td>sfc_POINT <\/td><\/tr><\/table><\/div>","<div class='scrollableContainer'><table class= id='popup'><tr class='coord'><td><\/td><th><b>Feature ID <\/b><\/th><td>17 <\/td><\/tr><tr><td>1<\/td><th>BayStation <\/th><td>60104 <\/td><\/tr><tr><td>2<\/td><th>StationName <\/th><td>North Sea 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class='scrollableContainer'><table class= id='popup'><tr class='coord'><td><\/td><th><b>Feature ID <\/b><\/th><td>19 <\/td><\/tr><tr><td>1<\/td><th>BayStation <\/th><td>60105 <\/td><\/tr><tr><td>2<\/td><th>StationName <\/th><td>Hog Neck Bay North <\/td><\/tr><tr><td>3<\/td><th>bay_segment <\/th><td>Central <\/td><\/tr><tr><td>4<\/td><th>yr <\/th><td>2019 <\/td><\/tr><tr><td>5<\/td><th>val <\/th><td>10.00 <\/td><\/tr><tr><td>6<\/td><th>val2 <\/th><td>10.00 <\/td><\/tr><tr><td>7<\/td><th>cexs <\/th><td> 4.00000 <\/td><\/tr><tr><td>8<\/td><th>geometry <\/th><td>sfc_POINT <\/td><\/tr><\/table><\/div>","<div class='scrollableContainer'><table class= id='popup'><tr class='coord'><td><\/td><th><b>Feature ID <\/b><\/th><td>20 <\/td><\/tr><tr><td>1<\/td><th>BayStation <\/th><td>60106 <\/td><\/tr><tr><td>2<\/td><th>StationName <\/th><td>Goose Creek <\/td><\/tr><tr><td>3<\/td><th>bay_segment <\/th><td>Central <\/td><\/tr><tr><td>4<\/td><th>yr <\/th><td>2019 <\/td><\/tr><tr><td>5<\/td><th>val <\/th><td> 5.50 <\/td><\/tr><tr><td>6<\/td><th>val2 <\/th><td> 5.50 <\/td><\/tr><tr><td>7<\/td><th>cexs <\/th><td>11.31250 <\/td><\/tr><tr><td>8<\/td><th>geometry <\/th><td>sfc_POINT <\/td><\/tr><\/table><\/div>","<div class='scrollableContainer'><table class= id='popup'><tr class='coord'><td><\/td><th><b>Feature ID <\/b><\/th><td>21 <\/td><\/tr><tr><td>1<\/td><th>BayStation <\/th><td>60107 <\/td><\/tr><tr><td>2<\/td><th>StationName <\/th><td>Town Creek <\/td><\/tr><tr><td>3<\/td><th>bay_segment <\/th><td>Central <\/td><\/tr><tr><td>4<\/td><th>yr <\/th><td>2019 <\/td><\/tr><tr><td>5<\/td><th>val <\/th><td> 7.00 <\/td><\/tr><tr><td>6<\/td><th>val2 <\/th><td> 7.00 <\/td><\/tr><tr><td>7<\/td><th>cexs <\/th><td> 8.87500 <\/td><\/tr><tr><td>8<\/td><th>geometry <\/th><td>sfc_POINT <\/td><\/tr><\/table><\/div>","<div class='scrollableContainer'><table class= id='popup'><tr class='coord'><td><\/td><th><b>Feature ID <\/b><\/th><td>22 <\/td><\/tr><tr><td>1<\/td><th>BayStation <\/th><td>60310 <\/td><\/tr><tr><td>2<\/td><th>StationName <\/th><td>Noyac Creek <\/td><\/tr><tr><td>3<\/td><th>bay_segment <\/th><td>Central <\/td><\/tr><tr><td>4<\/td><th>yr <\/th><td>2019 <\/td><\/tr><tr><td>5<\/td><th>val <\/th><td> 6.00 <\/td><\/tr><tr><td>6<\/td><th>val2 <\/th><td> 6.00 <\/td><\/tr><tr><td>7<\/td><th>cexs <\/th><td>10.50000 <\/td><\/tr><tr><td>8<\/td><th>geometry <\/th><td>sfc_POINT <\/td><\/tr><\/table><\/div>","<div class='scrollableContainer'><table class= id='popup'><tr class='coord'><td><\/td><th><b>Feature ID <\/b><\/th><td>23 <\/td><\/tr><tr><td>1<\/td><th>BayStation <\/th><td>60320 <\/td><\/tr><tr><td>2<\/td><th>StationName <\/th><td>Mill Creek <\/td><\/tr><tr><td>3<\/td><th>bay_segment <\/th><td>Central <\/td><\/tr><tr><td>4<\/td><th>yr <\/th><td>2019 <\/td><\/tr><tr><td>5<\/td><th>val <\/th><td> 8.00 <\/td><\/tr><tr><td>6<\/td><th>val2 <\/th><td> 8.00 <\/td><\/tr><tr><td>7<\/td><th>cexs <\/th><td> 7.25000 <\/td><\/tr><tr><td>8<\/td><th>geometry <\/th><td>sfc_POINT <\/td><\/tr><\/table><\/div>","<div class='scrollableContainer'><table class= id='popup'><tr class='coord'><td><\/td><th><b>Feature ID <\/b><\/th><td>24 <\/td><\/tr><tr><td>1<\/td><th>BayStation <\/th><td>60114 <\/td><\/tr><tr><td>2<\/td><th>StationName <\/th><td>Paradise Point <\/td><\/tr><tr><td>3<\/td><th>bay_segment <\/th><td>Central <\/td><\/tr><tr><td>4<\/td><th>yr <\/th><td>2019 <\/td><\/tr><tr><td>5<\/td><th>val <\/th><td>10.00 <\/td><\/tr><tr><td>6<\/td><th>val2 <\/th><td>10.00 <\/td><\/tr><tr><td>7<\/td><th>cexs <\/th><td> 4.00000 <\/td><\/tr><tr><td>8<\/td><th>geometry <\/th><td>sfc_POINT <\/td><\/tr><\/table><\/div>","<div class='scrollableContainer'><table class= id='popup'><tr class='coord'><td><\/td><th><b>Feature ID <\/b><\/th><td>25 <\/td><\/tr><tr><td>1<\/td><th>BayStation <\/th><td>60340 <\/td><\/tr><tr><td>2<\/td><th>StationName <\/th><td>Hashamomuck Pond 1 <\/td><\/tr><tr><td>3<\/td><th>bay_segment <\/th><td>Central <\/td><\/tr><tr><td>4<\/td><th>yr <\/th><td>2019 <\/td><\/tr><tr><td>5<\/td><th>val <\/th><td> 6.00 <\/td><\/tr><tr><td>6<\/td><th>val2 <\/th><td> 6.00 <\/td><\/tr><tr><td>7<\/td><th>cexs <\/th><td>10.50000 <\/td><\/tr><tr><td>8<\/td><th>geometry <\/th><td>sfc_POINT <\/td><\/tr><\/table><\/div>","<div class='scrollableContainer'><table class= id='popup'><tr class='coord'><td><\/td><th><b>Feature ID <\/b><\/th><td>26 <\/td><\/tr><tr><td>1<\/td><th>BayStation <\/th><td>60121 <\/td><\/tr><tr><td>2<\/td><th>StationName <\/th><td>Noyac 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class='scrollableContainer'><table class= id='popup'><tr class='coord'><td><\/td><th><b>Feature ID <\/b><\/th><td>28 <\/td><\/tr><tr><td>1<\/td><th>BayStation <\/th><td>60119 <\/td><\/tr><tr><td>2<\/td><th>StationName <\/th><td>West Neck Bay <\/td><\/tr><tr><td>3<\/td><th>bay_segment <\/th><td>Central <\/td><\/tr><tr><td>4<\/td><th>yr <\/th><td>2019 <\/td><\/tr><tr><td>5<\/td><th>val <\/th><td>10.00 <\/td><\/tr><tr><td>6<\/td><th>val2 <\/th><td>10.00 <\/td><\/tr><tr><td>7<\/td><th>cexs <\/th><td> 4.00000 <\/td><\/tr><tr><td>8<\/td><th>geometry <\/th><td>sfc_POINT <\/td><\/tr><\/table><\/div>","<div class='scrollableContainer'><table class= id='popup'><tr class='coord'><td><\/td><th><b>Feature ID <\/b><\/th><td>29 <\/td><\/tr><tr><td>1<\/td><th>BayStation <\/th><td>60126 <\/td><\/tr><tr><td>2<\/td><th>StationName <\/th><td>Sag Harbor <\/td><\/tr><tr><td>3<\/td><th>bay_segment <\/th><td>Eastern <\/td><\/tr><tr><td>4<\/td><th>yr <\/th><td>2019 <\/td><\/tr><tr><td>5<\/td><th>val <\/th><td> 8.00 <\/td><\/tr><tr><td>6<\/td><th>val2 <\/th><td> 8.00 <\/td><\/tr><tr><td>7<\/td><th>cexs <\/th><td> 7.25000 <\/td><\/tr><tr><td>8<\/td><th>geometry <\/th><td>sfc_POINT <\/td><\/tr><\/table><\/div>","<div class='scrollableContainer'><table class= id='popup'><tr class='coord'><td><\/td><th><b>Feature ID <\/b><\/th><td>30 <\/td><\/tr><tr><td>1<\/td><th>BayStation <\/th><td>60111 <\/td><\/tr><tr><td>2<\/td><th>StationName <\/th><td>Greenport Harbor <\/td><\/tr><tr><td>3<\/td><th>bay_segment <\/th><td>Eastern <\/td><\/tr><tr><td>4<\/td><th>yr <\/th><td>2019 <\/td><\/tr><tr><td>5<\/td><th>val <\/th><td> 8.00 <\/td><\/tr><tr><td>6<\/td><th>val2 <\/th><td> 8.00 <\/td><\/tr><tr><td>7<\/td><th>cexs <\/th><td> 7.25000 <\/td><\/tr><tr><td>8<\/td><th>geometry <\/th><td>sfc_POINT <\/td><\/tr><\/table><\/div>","<div class='scrollableContainer'><table class= id='popup'><tr class='coord'><td><\/td><th><b>Feature ID <\/b><\/th><td>31 <\/td><\/tr><tr><td>1<\/td><th>BayStation <\/th><td>60122 <\/td><\/tr><tr><td>2<\/td><th>StationName <\/th><td>Coecles Harbor <\/td><\/tr><tr><td>3<\/td><th>bay_segment <\/th><td>Eastern <\/td><\/tr><tr><td>4<\/td><th>yr <\/th><td>2019 <\/td><\/tr><tr><td>5<\/td><th>val <\/th><td> 9.00 <\/td><\/tr><tr><td>6<\/td><th>val2 <\/th><td> 9.00 <\/td><\/tr><tr><td>7<\/td><th>cexs <\/th><td> 5.62500 <\/td><\/tr><tr><td>8<\/td><th>geometry <\/th><td>sfc_POINT <\/td><\/tr><\/table><\/div>","<div class='scrollableContainer'><table class= id='popup'><tr class='coord'><td><\/td><th><b>Feature ID <\/b><\/th><td>32 <\/td><\/tr><tr><td>1<\/td><th>BayStation <\/th><td>60131 <\/td><\/tr><tr><td>2<\/td><th>StationName <\/th><td>Northwest Creek <\/td><\/tr><tr><td>3<\/td><th>bay_segment <\/th><td>Eastern <\/td><\/tr><tr><td>4<\/td><th>yr <\/th><td>2019 <\/td><\/tr><tr><td>5<\/td><th>val <\/th><td> 7.00 <\/td><\/tr><tr><td>6<\/td><th>val2 <\/th><td> 7.00 <\/td><\/tr><tr><td>7<\/td><th>cexs <\/th><td> 8.87500 <\/td><\/tr><tr><td>8<\/td><th>geometry <\/th><td>sfc_POINT <\/td><\/tr><\/table><\/div>","<div class='scrollableContainer'><table class= id='popup'><tr class='coord'><td><\/td><th><b>Feature ID <\/b><\/th><td>33 <\/td><\/tr><tr><td>1<\/td><th>BayStation <\/th><td>60118 <\/td><\/tr><tr><td>2<\/td><th>StationName <\/th><td>Northwest Harbor <\/td><\/tr><tr><td>3<\/td><th>bay_segment <\/th><td>Eastern <\/td><\/tr><tr><td>4<\/td><th>yr <\/th><td>2019 <\/td><\/tr><tr><td>5<\/td><th>val <\/th><td> 9.00 <\/td><\/tr><tr><td>6<\/td><th>val2 <\/th><td> 9.00 <\/td><\/tr><tr><td>7<\/td><th>cexs <\/th><td> 5.62500 <\/td><\/tr><tr><td>8<\/td><th>geometry <\/th><td>sfc_POINT <\/td><\/tr><\/table><\/div>","<div class='scrollableContainer'><table class= id='popup'><tr class='coord'><td><\/td><th><b>Feature ID <\/b><\/th><td>34 <\/td><\/tr><tr><td>1<\/td><th>BayStation <\/th><td>60115 <\/td><\/tr><tr><td>2<\/td><th>StationName <\/th><td>Orient Harbor <\/td><\/tr><tr><td>3<\/td><th>bay_segment <\/th><td>Eastern <\/td><\/tr><tr><td>4<\/td><th>yr <\/th><td>2019 <\/td><\/tr><tr><td>5<\/td><th>val <\/th><td> 7.75 <\/td><\/tr><tr><td>6<\/td><th>val2 <\/th><td> 7.75 <\/td><\/tr><tr><td>7<\/td><th>cexs <\/th><td> 7.65625 <\/td><\/tr><tr><td>8<\/td><th>geometry <\/th><td>sfc_POINT <\/td><\/tr><\/table><\/div>","<div class='scrollableContainer'><table class= id='popup'><tr class='coord'><td><\/td><th><b>Feature ID <\/b><\/th><td>35 <\/td><\/tr><tr><td>1<\/td><th>BayStation <\/th><td>60116 <\/td><\/tr><tr><td>2<\/td><th>StationName <\/th><td>Gardiner's Bay West <\/td><\/tr><tr><td>3<\/td><th>bay_segment <\/th><td>Eastern <\/td><\/tr><tr><td>4<\/td><th>yr <\/th><td>2019 <\/td><\/tr><tr><td>5<\/td><th>val <\/th><td> 8.00 <\/td><\/tr><tr><td>6<\/td><th>val2 <\/th><td> 8.00 <\/td><\/tr><tr><td>7<\/td><th>cexs <\/th><td> 7.25000 <\/td><\/tr><tr><td>8<\/td><th>geometry <\/th><td>sfc_POINT <\/td><\/tr><\/table><\/div>","<div class='scrollableContainer'><table class= id='popup'><tr class='coord'><td><\/td><th><b>Feature ID <\/b><\/th><td>36 <\/td><\/tr><tr><td>1<\/td><th>BayStation <\/th><td>60330 <\/td><\/tr><tr><td>2<\/td><th>StationName <\/th><td>Hallocks Bay <\/td><\/tr><tr><td>3<\/td><th>bay_segment <\/th><td>Eastern <\/td><\/tr><tr><td>4<\/td><th>yr <\/th><td>2019 <\/td><\/tr><tr><td>5<\/td><th>val <\/th><td> 6.00 <\/td><\/tr><tr><td>6<\/td><th>val2 <\/th><td> 6.00 <\/td><\/tr><tr><td>7<\/td><th>cexs <\/th><td>10.50000 <\/td><\/tr><tr><td>8<\/td><th>geometry <\/th><td>sfc_POINT <\/td><\/tr><\/table><\/div>","<div class='scrollableContainer'><table class= id='popup'><tr class='coord'><td><\/td><th><b>Feature ID <\/b><\/th><td>37 <\/td><\/tr><tr><td>1<\/td><th>BayStation <\/th><td>60132 <\/td><\/tr><tr><td>2<\/td><th>StationName <\/th><td>Three Mile Harbor <\/td><\/tr><tr><td>3<\/td><th>bay_segment <\/th><td>Eastern <\/td><\/tr><tr><td>4<\/td><th>yr <\/th><td>2019 <\/td><\/tr><tr><td>5<\/td><th>val <\/th><td> 9.00 <\/td><\/tr><tr><td>6<\/td><th>val2 <\/th><td> 9.00 <\/td><\/tr><tr><td>7<\/td><th>cexs <\/th><td> 5.62500 <\/td><\/tr><tr><td>8<\/td><th>geometry <\/th><td>sfc_POINT <\/td><\/tr><\/table><\/div>","<div class='scrollableContainer'><table class= id='popup'><tr class='coord'><td><\/td><th><b>Feature ID <\/b><\/th><td>38 <\/td><\/tr><tr><td>1<\/td><th>BayStation <\/th><td>60137 <\/td><\/tr><tr><td>2<\/td><th>StationName <\/th><td>Gardiner's Bay Central <\/td><\/tr><tr><td>3<\/td><th>bay_segment <\/th><td>Eastern <\/td><\/tr><tr><td>4<\/td><th>yr <\/th><td>2019 <\/td><\/tr><tr><td>5<\/td><th>val <\/th><td> 8.50 <\/td><\/tr><tr><td>6<\/td><th>val2 <\/th><td> 8.50 <\/td><\/tr><tr><td>7<\/td><th>cexs <\/th><td> 6.43750 <\/td><\/tr><tr><td>8<\/td><th>geometry <\/th><td>sfc_POINT <\/td><\/tr><\/table><\/div>","<div class='scrollableContainer'><table class= id='popup'><tr class='coord'><td><\/td><th><b>Feature ID <\/b><\/th><td>39 <\/td><\/tr><tr><td>1<\/td><th>BayStation <\/th><td>60133 <\/td><\/tr><tr><td>2<\/td><th>StationName <\/th><td>Acabonac Harbor <\/td><\/tr><tr><td>3<\/td><th>bay_segment <\/th><td>Eastern <\/td><\/tr><tr><td>4<\/td><th>yr <\/th><td>2019 <\/td><\/tr><tr><td>5<\/td><th>val <\/th><td> 8.00 <\/td><\/tr><tr><td>6<\/td><th>val2 <\/th><td> 8.00 <\/td><\/tr><tr><td>7<\/td><th>cexs <\/th><td> 7.25000 <\/td><\/tr><tr><td>8<\/td><th>geometry <\/th><td>sfc_POINT <\/td><\/tr><\/table><\/div>"],{"maxWidth":800,"minWidth":50,"autoPan":true,"keepInView":false,"closeButton":true,"closeOnClick":true,"className":""},["1","2","3","4","5","6","7","8","9","10","11","12","13","14","15","16","17","18","19","20","21","22","23","24","25","26","27","28","29","30","31","32","33","34","35","36","37","38","39"],{"interactive":false,"permanent":false,"direction":"auto","opacity":1,"offset":[0,0],"textsize":"10px","textOnly":false,"className":"","sticky":true},null]},{"method":"addScaleBar","args":[{"maxWidth":100,"metric":true,"imperial":true,"updateWhenIdle":true,"position":"bottomleft"}]},{"method":"addLayersControl","args":[["CartoDB.Positron","CartoDB.DarkMatter","OpenStreetMap","Esri.WorldImagery","OpenTopoMap"],"locs",{"collapsed":true,"autoZIndex":true,"position":"topleft"}]},{"method":"clearMarkers","args":[]},{"method":"addCircleMarkers","args":[[40.917283,40.917,40.9176,40.91776,40.917933,40.924067,40.921667,40.92935,40.913883,40.938333,40.922783,40.936383,40.900217,41.00195,41.008883,40.975833,40.942783,40.955267,41.027717,41.052717,41.059117,40.9941,40.99625,41.05,41.082217,41.013333,41.045283,41.063583,41.00778,41.106267,41.077983,41.010367,41.0275,41.1144,41.081383,41.13445,41.02055,41.098017,41.025],[-72.655567,-72.65115,-72.645583,-72.63891,-72.631917,-72.63225,-72.61945,-72.6199,-72.615,-72.618617,-72.587217,-72.512217,-72.459083,-72.460283,-72.460283,-72.42945,-72.414717,-72.399483,-72.433367,-72.414,-72.414233,-72.367833,-72.349817,-72.376667,-72.4025,-72.34445,-72.347217,-72.359317,-72.2955,-72.354867,-72.311617,-72.252517,-72.26,-72.317483,-72.27305,-72.271383,-72.18195,-72.203667,-72.139167],[16.59375,16.59375,17,16.59375,15.375,12.9375,13.34375,10.5,8.875,12.125,10.90625,9.28125,10.5,9.6875,10.5,4,10.5,8.875,4,11.3125,8.875,10.5,7.25,4,10.5,4,4,4,7.25,7.25,5.625,8.875,5.625,7.65625,7.25,10.5,5.625,6.4375,7.25],null,null,{"interactive":true,"className":"","stroke":true,"color":"black","weight":1,"opacity":0.5,"fill":true,"fillColor":["#B41427","#B41427","#A50026","#B41427","#DE422E","#FEB467","#FCA25B","#FFFFBF","#D3ECF4","#FED484","#FFF5B0","#E2F4F4","#FFFFBF","#EDF7E3","#FFFFBF","#313695","#FFFFBF","#D3ECF4","#313695","#FFECA2","#D3ECF4","#FFFFBF","#90C3DD","#313695","#FFFFBF","#313695","#313695","#313695","#90C3DD","#90C3DD","#5283BB","#D3ECF4","#5283BB","#A1D1E4","#90C3DD","#FFFFBF","#5283BB","#6FA6CD","#90C3DD"],"fillOpacity":0.8},null,null,null,null,["Bay station 60280 , secchi (ft) 2.25","Bay station 60275 , secchi (ft) 2.25","Bay station 60270 , secchi (ft) 2","Bay station 60265 , secchi (ft) 2.25","Bay station 60260 , secchi (ft) 3","Bay station 60250 , secchi (ft) 4.5","Bay station 60240 , secchi (ft) 4.25","Bay station 60230 , secchi (ft) 6","Bay station 60210 , secchi (ft) 7","Bay station 60220 , secchi (ft) 5","Bay station 60170 , secchi (ft) 5.75","Bay station 60130 , secchi (ft) 6.75","Bay station 60290 , secchi (ft) 6","Bay station 60102 , secchi (ft) 6.5","Bay station 60103 , secchi (ft) 6","Bay station 60113 , secchi (ft) 10","Bay station 60104 , secchi (ft) 6","Bay station 60300 , secchi (ft) 7","Bay station 60105 , secchi (ft) 10","Bay station 60106 , secchi (ft) 5.5","Bay station 60107 , secchi (ft) 7","Bay station 60310 , secchi (ft) 6","Bay station 60320 , secchi (ft) 8","Bay station 60114 , secchi (ft) 10","Bay station 60340 , secchi (ft) 6","Bay station 60121 , secchi (ft) 10","Bay station 60124 , secchi (ft) 10","Bay station 60119 , secchi (ft) 10","Bay station 60126 , secchi (ft) 8","Bay station 60111 , secchi (ft) 8","Bay station 60122 , secchi (ft) 9","Bay station 60131 , secchi (ft) 7","Bay station 60118 , secchi (ft) 9","Bay station 60115 , secchi (ft) 7.75","Bay station 60116 , secchi (ft) 8","Bay station 60330 , secchi (ft) 6","Bay station 60132 , secchi (ft) 9","Bay station 60137 , secchi (ft) 8.5","Bay station 60133 , secchi (ft) 8"],{"interactive":false,"permanent":false,"direction":"auto","opacity":1,"offset":[0,0],"textsize":"10px","textOnly":false,"className":"","sticky":true},null]},{"method":"addLegend","args":[{"colors":["#A50026 , #A50026 0%, #DE422E 12.5%, #F98F52 25%, #FED484 37.5%, #FFFFBF 50%, #D3ECF4 62.5%, #90C3DD 75%, #5283BB 87.5%, #313695 100%, #313695 "],"labels":["2","3","4","5","6","7","8","9","10"],"na_color":null,"na_label":"NA","opacity":0.5,"position":"bottomright","type":"numeric","title":"2019 secchi (ft)","extra":{"p_1":0,"p_n":1},"layerId":null,"className":"info 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---
class: left, top
.center[
## ESTIMATE SEGMENT MEDIANS
]
* All segment annual values based on medians, account for censored data (secchi on bottom)
```r
medpep <- anlz_medpep(dat)
medpep$ann
```
```
## # A tibble: 792 x 5
## bay_segment yr val est var
## <fct> <dbl> <dbl> <chr> <chr>
## 1 Western 2019 3.03 lwr.ci chla
## 2 Western 2019 4.22 medv chla
## 3 Western 2019 6.26 upr.ci chla
## 4 Western 2018 3.89 lwr.ci chla
## 5 Western 2018 4.82 medv chla
## 6 Western 2018 6 upr.ci chla
## 7 Western 2017 3.58 lwr.ci chla
## 8 Western 2017 5.29 medv chla
## 9 Western 2017 7.04 upr.ci chla
## 10 Western 2016 3.14 lwr.ci chla
## # ... with 782 more rows
```
---
.center[
## REPORTING
]
* Provisional targets ([Suffolk Co 2019 SWP](https://suffolkcountyny.gov/Departments/Health-Services/Environmental-Quality#SubWWPlan)) for water clarity and secchi depth
```r
peptargets
```
```
## # A tibble: 3 x 4
## bay_segment name sd_thresh chla_thresh
## <fct> <chr> <dbl> <dbl>
## 1 Western Western 6.5 5.5
## 2 Central Central 6.5 5.5
## 3 Eastern Eastern 6.5 5.5
```
---
.center[
## REPORTING
]
* Apply targets to annual medians
```r
anlz_attainpep(medpep)
```
```
## # A tibble: 132 x 4
## bay_segment yr chla_sd outcome
## <fct> <dbl> <chr> <chr>
## 1 Western 2019 2_3 red
## 2 Western 2018 2_3 red
## 3 Western 2017 2_3 red
## 4 Western 2016 0_3 yellow
## 5 Western 2015 0_2 yellow
## 6 Western 2014 0_0 green
## 7 Western 2013 1_1 yellow
## 8 Western 2012 1_2 yellow
## 9 Western 2011 1_2 yellow
## 10 Western 2010 3_3 red
## # ... with 122 more rows
```
---
class: left, top
.center[
## REPORTING
]
* Jointly considers chlorophyll and water clarity endpoints
* Annual categories depend on both a __duration__ and __magnitude__ of exceedance
--
<img src="figure/outints.png" width="90%" style="display: block; margin: auto;" />
.center[
.footnote[[TBEP tech report #04-00](https://drive.google.com/file/d/1juhfptqA4R-Bq_XfW6nOhqFxJSorGkfq/view?usp=drivesdk)]
]
---
class: left, top
.center[
## REPORTING
]
* Jointly considers chlorophyll and water clarity endpoints
* Annual categories depend on both a __duration__ and __magnitude__ of exceedance
<img src="figure/matrixcats.png" width="80%" style="display: block; margin: auto;" />
.center[
.footnote[[TBEP tech report #04-00](https://drive.google.com/file/d/1juhfptqA4R-Bq_XfW6nOhqFxJSorGkfq/view?usp=drivesdk)]
]
---
class: left, top
.center[
## REPORTING
]
* Translate segment water quality conditions into annual reporting categories to inform/prioritize management actions towards CCMP goals
--
* In Tampa...
<span style="color:#33FF3B; text-shadow: 0 0 3px #333;">__Stay the Course__</span>: Continue planned projects. Report data via annual progress reports and Baywide Environmental Monitoring Report.
<span style="color:#F9FF33; text-shadow: 0 0 3px #333;">__Caution__</span>: Review monitoring data and nitrogen loading estimates. Begin/continue TAC and Management Board development of specific management recommendations.
<span style="color:#FF3333; text-shadow: 0 0 3px #333;">__On Alert__</span>: Finalize development and implement appropriate management actions to get back on track.
---
class: left, top
.center[
## REPORTING
]
```r
show_matrixpep(dat, asreact = TRUE, nrows = 8)
```
<div id="htmlwidget-5d7c8e14021442a07f35" class="reactable html-widget" style="width:auto;height:auto;"></div>
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---
class: left, top
.center[
## REPORTING
]
```r
show_plotlypep(rawdat, bay_segment = 'Western')
```
<div id="htmlwidget-91989ddce842d58e1fe6" style="width:100%;height:440px;" class="plotly html-widget"></div>
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(length)","type":"scatter","mode":"lines","line":{"width":0.377952755905512,"color":"rgba(0,0,0,1)","dash":"solid"},"fill":"toself","fillcolor":"rgba(0,255,0,1)","hoveron":"fills","name":"green","legendgroup":"green","showlegend":false,"xaxis":"x","yaxis":"y2","hoverinfo":"text","frame":null},{"x":[2012.5,2013.5,2013.5,2012.5,2012.5,null,2011.5,2012.5,2012.5,2011.5,2011.5,null,2010.5,2011.5,2011.5,2010.5,2010.5,null,2004.5,2005.5,2005.5,2004.5,2004.5,null,2003.5,2004.5,2004.5,2003.5,2003.5,null,2002.5,2003.5,2003.5,2002.5,2002.5,null,2001.5,2002.5,2002.5,2001.5,2001.5,null,2000.5,2001.5,2001.5,2000.5,2000.5,null,1999.5,2000.5,2000.5,1999.5,1999.5,null,1998.5,1999.5,1999.5,1998.5,1998.5,null,1997.5,1998.5,1998.5,1997.5,1997.5,null,1990.5,1991.5,1991.5,1990.5,1990.5,null,1989.5,1990.5,1990.5,1989.5,1989.5],"y":[2.5,2.5,3.5,3.5,2.5,null,2.5,2.5,3.5,3.5,2.5,null,2.5,2.5,3.5,3.5,2.5,null,2.5,2.5,3.5,3.5,2.5,null,2.5,2.5,3.5,3.5,2.5,null,2.5,2.5,3.5,3.5,2.5,null,2.5,2.5,3.5,3.5,2.5,null,2.5,2.5,3.5,3.5,2.5,null,2.5,2.5,3.5,3.5,2.5,null,2.5,2.5,3.5,3.5,2.5,null,2.5,2.5,3.5,3.5,2.5,null,2.5,2.5,3.5,3.5,2.5,null,2.5,2.5,3.5,3.5,2.5],"text":"Result: 0, Exceedance: none (size), none (length)","type":"scatter","mode":"lines","line":{"width":0.377952755905512,"color":"rgba(0,0,0,1)","dash":"solid"},"fill":"toself","fillcolor":"rgba(0,255,0,1)","hoveron":"fills","name":"green","legendgroup":"green","showlegend":false,"xaxis":"x","yaxis":"y2","hoverinfo":"text","frame":null},{"x":[2015.5,2016.5,2016.5,2015.5,2015.5,null,2014.5,2015.5,2015.5,2014.5,2014.5,null,2013.5,2014.5,2014.5,2013.5,2013.5,null,2007.5,2008.5,2008.5,2007.5,2007.5,null,2006.5,2007.5,2007.5,2006.5,2006.5,null,2005.5,2006.5,2006.5,2005.5,2005.5,null,1993.5,1994.5,1994.5,1993.5,1993.5,null,1992.5,1993.5,1993.5,1992.5,1992.5,null,1991.5,1992.5,1992.5,1991.5,1991.5,null,2013.5,2014.5,2014.5,2013.5,2013.5],"y":[2.5,2.5,3.5,3.5,2.5,null,2.5,2.5,3.5,3.5,2.5,null,2.5,2.5,3.5,3.5,2.5,null,2.5,2.5,3.5,3.5,2.5,null,2.5,2.5,3.5,3.5,2.5,null,2.5,2.5,3.5,3.5,2.5,null,2.5,2.5,3.5,3.5,2.5,null,2.5,2.5,3.5,3.5,2.5,null,2.5,2.5,3.5,3.5,2.5,null,0.5,0.5,1.5,1.5,0.5],"text":"Result: 0, Exceedance: none (size), short (length)","type":"scatter","mode":"lines","line":{"width":0.377952755905512,"color":"rgba(0,0,0,1)","dash":"solid"},"fill":"toself","fillcolor":"rgba(0,255,0,1)","hoveron":"fills","name":"green","legendgroup":"green","showlegend":false,"xaxis":"x","yaxis":"y2","hoverinfo":"text","frame":null},{"x":[2008.5,2009.5,2009.5,2008.5,2008.5,null,1994.5,1995.5,1995.5,1994.5,1994.5,null,2012.5,2013.5,2013.5,2012.5,2012.5],"y":[2.5,2.5,3.5,3.5,2.5,null,2.5,2.5,3.5,3.5,2.5,null,0.5,0.5,1.5,1.5,0.5],"text":"Result: 1, Exceedance: small (size), short (length)","type":"scatter","mode":"lines","line":{"width":0.377952755905512,"color":"rgba(0,0,0,1)","dash":"solid"},"fill":"toself","fillcolor":"rgba(0,255,0,1)","hoveron":"fills","name":"green","legendgroup":"green","showlegend":false,"xaxis":"x","yaxis":"y2","hoverinfo":"text","frame":null},{"x":[2006.5,2007.5,2007.5,2006.5,2006.5,null,2005.5,2006.5,2006.5,2005.5,2005.5,null,1997.5,1998.5,1998.5,1997.5,1997.5],"y":[0.5,0.5,1.5,1.5,0.5,null,0.5,0.5,1.5,1.5,0.5,null,0.5,0.5,1.5,1.5,0.5],"text":"Result: 2, Exceedance: small (size), long (length)","type":"scatter","mode":"lines","line":{"width":0.377952755905512,"color":"rgba(0,0,0,1)","dash":"solid"},"fill":"toself","fillcolor":"rgba(0,255,0,1)","hoveron":"fills","name":"green","legendgroup":"green","showlegend":false,"xaxis":"x","yaxis":"y2","hoverinfo":"text","frame":null},{"x":[2016.5,2017.5,2017.5,2016.5,2016.5],"y":[2.5,2.5,3.5,3.5,2.5],"text":"Result: 2, Exceedance: small (size), NA (length)","type":"scatter","mode":"lines","line":{"width":0.377952755905512,"color":"rgba(0,0,0,1)","dash":"solid"},"fill":"toself","fillcolor":"rgba(0,255,0,1)","hoveron":"fills","name":"green","legendgroup":"green","showlegend":false,"xaxis":"x","yaxis":"y2","hoverinfo":"text","frame":null},{"x":[2013.5,2014.5,2014.5,2013.5,2013.5],"y":[1.5,1.5,2.5,2.5,1.5],"text":"Result: Stay the Course (chla: 0, sd: 0)","type":"scatter","mode":"lines","line":{"width":0.377952755905512,"color":"rgba(0,0,0,1)","dash":"solid"},"fill":"toself","fillcolor":"rgba(0,255,0,1)","hoveron":"fills","name":"green","legendgroup":"green","showlegend":false,"xaxis":"x","yaxis":"y2","hoverinfo":"text","frame":null},{"x":[2009.5,2010.5,2010.5,2009.5,2009.5,null,1995.5,1996.5,1996.5,1995.5,1995.5],"y":[2.5,2.5,3.5,3.5,2.5,null,2.5,2.5,3.5,3.5,2.5],"text":"Result: 1, Exceedance: small (size), short (length)","type":"scatter","mode":"lines","line":{"width":0.377952755905512,"color":"rgba(0,0,0,1)","dash":"solid"},"fill":"toself","fillcolor":"rgba(255,0,0,1)","hoveron":"fills","name":"red","legendgroup":"red","showlegend":false,"xaxis":"x","yaxis":"y2","hoverinfo":"text","frame":null},{"x":[1996.5,1997.5,1997.5,1996.5,1996.5,null,2011.5,2012.5,2012.5,2011.5,2011.5,null,2010.5,2011.5,2011.5,2010.5,2010.5],"y":[2.5,2.5,3.5,3.5,2.5,null,0.5,0.5,1.5,1.5,0.5,null,0.5,0.5,1.5,1.5,0.5],"text":"Result: 2, Exceedance: large (size), short (length)","type":"scatter","mode":"lines","line":{"width":0.377952755905512,"color":"rgba(0,0,0,1)","dash":"solid"},"fill":"toself","fillcolor":"rgba(255,0,0,1)","hoveron":"fills","name":"red","legendgroup":"red","showlegend":false,"xaxis":"x","yaxis":"y2","hoverinfo":"text","frame":null},{"x":[2014.5,2015.5,2015.5,2014.5,2014.5,null,2003.5,2004.5,2004.5,2003.5,2003.5,null,2001.5,2002.5,2002.5,2001.5,2001.5,null,2000.5,2001.5,2001.5,2000.5,2000.5,null,1998.5,1999.5,1999.5,1998.5,1998.5,null,1993.5,1994.5,1994.5,1993.5,1993.5],"y":[0.5,0.5,1.5,1.5,0.5,null,0.5,0.5,1.5,1.5,0.5,null,0.5,0.5,1.5,1.5,0.5,null,0.5,0.5,1.5,1.5,0.5,null,0.5,0.5,1.5,1.5,0.5,null,0.5,0.5,1.5,1.5,0.5],"text":"Result: 2, Exceedance: small (size), long (length)","type":"scatter","mode":"lines","line":{"width":0.377952755905512,"color":"rgba(0,0,0,1)","dash":"solid"},"fill":"toself","fillcolor":"rgba(255,0,0,1)","hoveron":"fills","name":"red","legendgroup":"red","showlegend":false,"xaxis":"x","yaxis":"y2","hoverinfo":"text","frame":null},{"x":[2018.5,2019.5,2019.5,2018.5,2018.5],"y":[0.5,0.5,1.5,1.5,0.5],"text":"Result: 2, Exceedance: small (size), NA (length)","type":"scatter","mode":"lines","line":{"width":0.377952755905512,"color":"rgba(0,0,0,1)","dash":"solid"},"fill":"toself","fillcolor":"rgba(255,0,0,1)","hoveron":"fills","name":"red","legendgroup":"red","showlegend":false,"xaxis":"x","yaxis":"y2","hoverinfo":"text","frame":null},{"x":[2015.5,2016.5,2016.5,2015.5,2015.5,null,2009.5,2010.5,2010.5,2009.5,2009.5,null,2008.5,2009.5,2009.5,2008.5,2008.5,null,2007.5,2008.5,2008.5,2007.5,2007.5,null,2004.5,2005.5,2005.5,2004.5,2004.5,null,2002.5,2003.5,2003.5,2002.5,2002.5,null,1999.5,2000.5,2000.5,1999.5,1999.5,null,1996.5,1997.5,1997.5,1996.5,1996.5,null,1995.5,1996.5,1996.5,1995.5,1995.5,null,1994.5,1995.5,1995.5,1994.5,1994.5,null,1992.5,1993.5,1993.5,1992.5,1992.5,null,1991.5,1992.5,1992.5,1991.5,1991.5,null,1990.5,1991.5,1991.5,1990.5,1990.5,null,1989.5,1990.5,1990.5,1989.5,1989.5],"y":[0.5,0.5,1.5,1.5,0.5,null,0.5,0.5,1.5,1.5,0.5,null,0.5,0.5,1.5,1.5,0.5,null,0.5,0.5,1.5,1.5,0.5,null,0.5,0.5,1.5,1.5,0.5,null,0.5,0.5,1.5,1.5,0.5,null,0.5,0.5,1.5,1.5,0.5,null,0.5,0.5,1.5,1.5,0.5,null,0.5,0.5,1.5,1.5,0.5,null,0.5,0.5,1.5,1.5,0.5,null,0.5,0.5,1.5,1.5,0.5,null,0.5,0.5,1.5,1.5,0.5,null,0.5,0.5,1.5,1.5,0.5,null,0.5,0.5,1.5,1.5,0.5],"text":"Result: 3, Exceedance: large (size), long (length)","type":"scatter","mode":"lines","line":{"width":0.377952755905512,"color":"rgba(0,0,0,1)","dash":"solid"},"fill":"toself","fillcolor":"rgba(255,0,0,1)","hoveron":"fills","name":"red","legendgroup":"red","showlegend":false,"xaxis":"x","yaxis":"y2","hoverinfo":"text","frame":null},{"x":[2017.5,2018.5,2018.5,2017.5,2017.5,null,2016.5,2017.5,2017.5,2016.5,2016.5],"y":[0.5,0.5,1.5,1.5,0.5,null,0.5,0.5,1.5,1.5,0.5],"text":"Result: 3, Exceedance: large (size), NA (length)","type":"scatter","mode":"lines","line":{"width":0.377952755905512,"color":"rgba(0,0,0,1)","dash":"solid"},"fill":"toself","fillcolor":"rgba(255,0,0,1)","hoveron":"fills","name":"red","legendgroup":"red","showlegend":false,"xaxis":"x","yaxis":"y2","hoverinfo":"text","frame":null},{"x":[2009.5,2010.5,2010.5,2009.5,2009.5,null,2008.5,2009.5,2009.5,2008.5,2008.5,null,1995.5,1996.5,1996.5,1995.5,1995.5,null,1994.5,1995.5,1995.5,1994.5,1994.5],"y":[1.5,1.5,2.5,2.5,1.5,null,1.5,1.5,2.5,2.5,1.5,null,1.5,1.5,2.5,2.5,1.5,null,1.5,1.5,2.5,2.5,1.5],"text":"Result: On Alert (chla: 1, sd: 3)","type":"scatter","mode":"lines","line":{"width":0.377952755905512,"color":"rgba(0,0,0,1)","dash":"solid"},"fill":"toself","fillcolor":"rgba(255,0,0,1)","hoveron":"fills","name":"red","legendgroup":"red","showlegend":false,"xaxis":"x","yaxis":"y2","hoverinfo":"text","frame":null},{"x":[2016.5,2017.5,2017.5,2016.5,2016.5,null,1996.5,1997.5,1997.5,1996.5,1996.5],"y":[1.5,1.5,2.5,2.5,1.5,null,1.5,1.5,2.5,2.5,1.5],"text":"Result: On Alert (chla: 2, sd: 3)","type":"scatter","mode":"lines","line":{"width":0.377952755905512,"color":"rgba(0,0,0,1)","dash":"solid"},"fill":"toself","fillcolor":"rgba(255,0,0,1)","hoveron":"fills","name":"red","legendgroup":"red","showlegend":false,"xaxis":"x","yaxis":"y2","hoverinfo":"text","frame":null},{"x":[2012.5,2013.5,2013.5,2012.5,2012.5],"y":[1.5,1.5,2.5,2.5,1.5],"text":"Result: Caution (chla: 0, sd: 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---
class: left, top
.center[
## EXPLORING ALTERNATIVES
]
* Future discussions may involve additional decisions on appropriate targets
* AND if the targets vary by estuary segments, e.g., by salinity gradients
--
* The `peptools` package was built with this in mind...
```r
segs <- c('Western', 'Central', 'Eastern')
newtrgs <- tibble(
bay_segment = factor(segs, levels = segs),
name = factor(segs, levels = segs),
sd_thresh = c(5.5, 6.5, 7.5),
chla_thresh = c(6, 5.5, 5)
)
```
---
class: left, top
.center[
## EXPLORING ALTERNATIVES
]
```r
show_matrixpep(dat, trgs = newtrgs, asreact = T, nrow = 8)
```
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---
class: left, top
.center[
## RESOURCES
]
* `peptools` package website: [link](https://tbep-tech.github.io/peptools/)
* `peptools` GitHub source: [link](https://github.com/tbep-tech/peptools)
* Alternative thresholds example: [link](https://tbep-tech.github.io/peptools/articles/Introduction.html#testing-different-thresholds)
* `tbeptools` package website: [link](https://tbep-tech.github.io/tbeptools/)
* TBEP open science subcommittee: [link](https://tbep.org/our-work/boards-committees/technical-advisory-committee/)
---
class: left, top
.center[
## GOALS FOR TODAY
]
1. Vibe check: do we like these approaches?
1. Are there additional tools to add?
1. How could the Monitoring Collaborative use these tools?
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