-
Notifications
You must be signed in to change notification settings - Fork 0
/
Copy pathosupdates02022021.Rmd
152 lines (101 loc) · 3.55 KB
/
osupdates02022021.Rmd
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
---
title: "Open Science Updates"
author: "[Dr. Marcus Beck](mailto:[email protected]) $\\bullet$ [\\@fawda123](https://twitter.com/fawda123) $\\bullet$ [#TampaBayOpensci](https://twitter.com/hashtag/TampaBayOpenSci?src=hashtag_click)"
institute: "Tampa Bay Estuary Program"
date: "2/2/2021"
output:
xaringan::moon_reader:
nature:
highlightLines: true
countIncrementalSlides: false
lib_dir: libs
css: styles3.css
includes:
after_body: insert-logo-tbep.html
---
```{r, message = F, echo = F, warning = F}
library(knitr)
library(extrafont)
library(xaringanExtra)
library(icon)
loadfonts(device = 'win', quiet = T)
fml <- 'Lato Light'
# global knitr options
opts_chunk$set(message = FALSE, dev.args = list(family = fml), dpi = 300, dev = 'png', echo = F, warning = F, fig.align = 'center', out.width = '100%')
```
class: top, left
.center[
## Subcommittee roles and responsibilities
]
1. Support development of open science products at TBEP
1. Rank priority research areas for developing open science products
1. Facilitate training activities
.center[[Guiding Document](https://docs.google.com/document/d/1w6dVTwfYYDRVzGPXy0jyHxV4mwOutEY_ISMP1oAdZ_c/edit)]
---
class: top, center
## RESOURCES WEB PAGE
[https://tbep-tech.github.io/](https://tbep-tech.github.io/)
```{r, out.width = '80%'}
knitr::include_graphics('figure/resources.PNG')
```
---
class: top, center
## CREATING GITHUB ISSUES
[https://github.com/tbep-tech/tbep-tech.github.io/issues/new/choose](https://github.com/tbep-tech/tbep-tech.github.io/issues/new/choose)
* Go here to add to the resources tab
```{r, out.width = '100%'}
knitr::include_graphics('figure/issues.PNG')
```
---
class: top, center
## DATA MANAGEMENT SOP
[https://tbep-tech.github.io/data-management-sop/](https://tbep-tech.github.io/data-management-sop/)
* Currently drafting, provide your feedback!
```{r}
knitr::include_graphics('figure/datamanage.PNG')
```
---
class: top, center
## SEAGRASS TRANSECT DASHBOARD
[https://shiny.tbep.org/seagrasstransect-dash/](https://shiny.tbep.org/seagrasstransect-dash/)
* Completed, but looking for feedback!
```{r}
knitr::include_graphics('figure/seagrasstransdash.PNG')
```
---
class: top, left
## DISCUSSION ITEMS
* IT support/long-term maintenance
* Problem: OS software typically doesn't have dedicated IT staff or professional support that other platforms offer
* Problem: OS developers have no incentive to follow best practices for software dev
* But see [https://ropensci.org/](https://ropensci.org/)
```{r}
knitr::include_graphics('figure/softwaretradeoff.png')
```
---
class: top, left
## DISCUSSION ITEMS
* R package dependencies
* Problem: Software continues to develop, risking backwards incompatibility
* Problem: R is a complex network of dependencies, making the entire system vulnerable to deprecation
* Resources for addressing the problem: [groundhog](http://datacolada.org/95), [renv](https://rstudio.github.io/renv/index.html)
* Also be aware the top developers are thinking about this problem...
---
class: top, left
.center[
## 2021 MEETINGS
]
* Upcoming meetings
* May 4: Developing the Peconic Estuary Assessment Framework, Sarah Schaeffer (PEP), Gerold Morrison (CWP)
* Aug 3
* Nov 2
* Soliciting speakers, send us ideas!
---
class: top, left
.center[
## 2021 TRAINING
]
* Feb 9th [Shiny training](https://tbep-tech.github.io/tbep-r-training/shiny.html) - FWRI R club
* March [NERRS R trainings](https://tbep-tech.github.io/ecometab-r-training/) - open invite
* BASIS workshop Oct. 2021
* CERF workshop Nov. 2021