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ChangeLog
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* 2023-09-07(Alan O'Callaghan) R cmd check notes |aa2e2bb|
| .Rbuildignore | 1 +
| R/heatmaply.R | 1 +
| README.md | 21 +++++++++++++--------
| inst/CITATION | 8 +++-----
| man/heatmaply.Rd | 6 +++++-
| 5 files changed, 23 insertions(+), 14 deletions(-)
* 2023-09-07(Alan O'Callaghan) Resolve #295 |17c5526|
| DESCRIPTION | 2 +-
| NEWS | 1 +
| R/heatmaply.R | 54 +++++++++++++++++++++++++++++-------------------------
| R/plots.R | 23 +++++++++++++----------
| 4 files changed, 44 insertions(+), 36 deletions(-)
* 2023-07-20(Alan O'Callaghan) Avoid expensive transpose |817b566|
| R/heatmapr.R | 15 ++++++++-------
| 1 file changed, 8 insertions(+), 7 deletions(-)
* 2023-07-11(Alan O'Callaghan) Remove old docs |71458a2|
| docs/articles/heatmaply.html | 52 +-
| .../crosstalk-1.0.0/css/crosstalk.css | 27 -
| .../crosstalk-1.0.0/js/crosstalk.js | 1471 ---
| .../crosstalk-1.0.0/js/crosstalk.js.map | 37 -
| .../crosstalk-1.0.0/js/crosstalk.min.js | 2 -
| .../crosstalk-1.0.0/js/crosstalk.min.js.map | 1 -
| .../crosstalk-1.1.1/css/crosstalk.css | 27 -
| .../crosstalk-1.1.1/js/crosstalk.js | 1474 ---
| .../crosstalk-1.1.1/js/crosstalk.js.map | 37 -
| .../crosstalk-1.1.1/js/crosstalk.min.js | 2 -
| .../crosstalk-1.1.1/js/crosstalk.min.js.map | 1 -
| .../figure-html/unnamed-chunk-20-1.png | Bin 10157 -> 0 bytes
| .../figure-html/unnamed-chunk-23-1.png | Bin 9430 -> 0 bytes
| .../htmlwidgets-1.3/htmlwidgets.js | 839 --
| .../htmlwidgets-1.5.1/htmlwidgets.js | 903 --
| .../htmlwidgets-1.5.3/htmlwidgets.js | 903 --
| .../jquery-1.11.3/jquery-AUTHORS.txt | 217 -
| .../heatmaply_files/jquery-1.11.3/jquery.js | 10351 -----------------
| .../heatmaply_files/jquery-1.11.3/jquery.min.js | 5 -
| .../heatmaply_files/jquery-1.11.3/jquery.min.map | 1 -
| .../jquery-3.5.1/jquery-AUTHORS.txt | 357 -
| .../heatmaply_files/jquery-3.5.1/jquery.js | 10872 ------------------
| .../heatmaply_files/jquery-3.5.1/jquery.min.js | 2 -
| .../heatmaply_files/jquery-3.5.1/jquery.min.map | 1 -
| .../plotly-binding-4.9.0/plotly.js | 931 --
| .../plotly-binding-4.9.1/plotly.js | 935 --
| .../plotly-binding-4.9.3/plotly.js | 935 --
| .../plotly-htmlwidgets.css | 9 -
| .../plotly-htmlwidgets.css | 9 -
| .../plotly-htmlwidgets.css | 9 -
| .../plotly-main-1.46.1/plotly-latest.min.js | 7 -
| .../plotly-main-1.49.4/plotly-latest.min.js | 7 -
| .../plotly-main-1.57.1/plotly-latest.min.js | 61 -
| docs/pkgdown.yml | 2 +-
| docs/reference/RColorBrewer_colors-1.png | Bin 54380 -> 0 bytes
| docs/reference/RColorBrewer_colors-2.png | Bin 74571 -> 0 bytes
| docs/reference/heatmaply-1.png | Bin 75746 -> 0 bytes
| docs/reference/heatmaply.html | 11 +-
| docs/reference/heatmaply_iris.html | 23 -
| docs/reference/heatmaply_iris.png | Bin 39646 -> 0 bytes
| .../crosstalk-1.0.0/css/crosstalk.css | 27 -
| .../crosstalk-1.0.0/js/crosstalk.js | 1471 ---
| .../crosstalk-1.0.0/js/crosstalk.js.map | 37 -
| .../crosstalk-1.0.0/js/crosstalk.min.js | 2 -
| .../crosstalk-1.0.0/js/crosstalk.min.js.map | 1 -
| .../htmlwidgets-1.5.1/htmlwidgets.js | 903 --
| .../jquery-1.11.3/jquery-AUTHORS.txt | 217 -
| .../heatmaply_iris_files/jquery-1.11.3/jquery.js | 10351 -----------------
| .../jquery-1.11.3/jquery.min.js | 5 -
| .../jquery-1.11.3/jquery.min.map | 1 -
| .../plotly-binding-4.9.1/plotly.js | 935 --
| .../plotly-htmlwidgets.css | 9 -
| .../plotly-main-1.49.4/plotly-latest.min.js | 7 -
| .../typedarray-0.1/typedarray.min.js | 1 -
| docs/sitemap.xml | 3 -
| 55 files changed, 35 insertions(+), 44456 deletions(-)
* 2023-07-11(Alan O'Callaghan) Document |f8c4bbb|
| .Rbuildignore | 1 +
| NEWS | 2 +-
| R/heatmaply.R | 8 +++++---
| man/heatmaply.Rd | 11 ++++++++---
| 4 files changed, 15 insertions(+), 7 deletions(-)
* 2023-07-11(Alan O'Callaghan) Update pkgdown |6f67dcd|
| docs/404.html | 4 +-
| docs/CONDUCT.html | 5 +-
| docs/articles/heatmaply.html | 883 +++++------
| .../crosstalk-1.2.0/css/crosstalk.min.css | 1 +
| .../crosstalk-1.2.0/js/crosstalk.js | 1474 +++++++++++++++++++
| .../crosstalk-1.2.0/js/crosstalk.js.map | 37 +
| .../crosstalk-1.2.0/js/crosstalk.min.js | 2 +
| .../crosstalk-1.2.0/js/crosstalk.min.js.map | 1 +
| .../crosstalk-1.2.0/scss/crosstalk.scss | 75 +
| .../figure-html/unnamed-chunk-21-1.png | Bin 23280 -> 28473 bytes
| .../figure-html/unnamed-chunk-24-1.png | Bin 19635 -> 25759 bytes
| .../figure-html/unnamed-chunk-29-1.png | Bin 78976 -> 89695 bytes
| .../htmlwidgets-1.6.2/htmlwidgets.js | 901 ++++++++++++
| .../plotly-binding-4.10.2/plotly.js | 941 ++++++++++++
| .../plotly-htmlwidgets.css | 9 +
| .../plotly-main-2.11.1/plotly-latest.min.js | 69 +
| docs/articles/index.html | 109 +-
| docs/authors.html | 4 +-
| docs/index.html | 53 +-
| docs/news/index.html | 1128 +++++---------
| docs/pkgdown.css | 83 +-
| docs/pkgdown.js | 4 +-
| docs/pkgdown.yml | 6 +-
| docs/reference/RColorBrewer_colors.html | 324 ++--
| docs/reference/Rplot002.png | Bin 35438 -> 40671 bytes
| docs/reference/ggheatmap-1.png | Bin 131761 -> 136603 bytes
| docs/reference/ggheatmap.html | 188 +--
| docs/reference/ggplot_side_color_plot.html | 218 +--
| docs/reference/heatmaply.html | 1468 +++++++++---------
| docs/reference/heatmapr.html | 628 ++++----
| docs/reference/index.html | 172 +--
| docs/reference/is.heatmapr.html | 134 +-
| docs/reference/is.na10.html | 202 +--
| docs/reference/is.plotly.html | 134 +-
| docs/reference/normalize.html | 196 +--
| docs/reference/percentize.html | 196 +--
| docs/sitemap.xml | 60 +
| 37 files changed, 6008 insertions(+), 3701 deletions(-)
* 2023-07-11(Alan O'Callaghan) Update news/desc |039dc56|
| DESCRIPTION | 2 +-
| NEWS | 4 +++-
| 2 files changed, 4 insertions(+), 2 deletions(-)
* 2023-07-11(cole-johanson) Adds height/width arguments to plotly methods (#282) |b7d9b66|
| R/heatmaply.R | 36 ++++++++++++++++++++++++------------
| R/plots.R | 9 +++++++--
| 2 files changed, 31 insertions(+), 14 deletions(-)
* 2023-07-11(Alan O'Callaghan) Bugfix in scaling fun |a808467|
| NEWS | 2 +-
| R/heatmapr.R | 2 +-
| R/plots.R | 2 +-
| 3 files changed, 3 insertions(+), 3 deletions(-)
* 2023-07-11(Alan O'Callaghan) #292 |c94b17f|
| DESCRIPTION | 4 ++--
| NEWS | 6 ++++++
| R/heatmapr.R | 15 +++++++++++----
| 3 files changed, 19 insertions(+), 6 deletions(-)
* 2023-07-11(Alan O'Callaghan) Revert "#292" |b5295ba|
| DESCRIPTION | 4 ++--
| NEWS | 15 ---------------
| R/heatmapr.R | 15 ++++-----------
| R/plots.R | 46 +++++-----------------------------------------
| 4 files changed, 11 insertions(+), 69 deletions(-)
* 2023-07-11(Alan O'Callaghan) Doc |7142a74|
| DESCRIPTION | 2 +-
| man/heatmaply.Rd | 3 +--
| man/heatmapr.Rd | 3 +--
| 3 files changed, 3 insertions(+), 5 deletions(-)
* 2023-07-11(Alan O'Callaghan) Merge branch 'master' of github.com:talgalili/heatmaply |d26488b
|\
| * 2023-03-22(Alan O'Callaghan) Use local heatmaply for pkgdown |c44dde0| |
| | .github/workflows/pkgdown.yaml | 2 +-
| | 1 file changed, 1 insertion(+), 1 deletion(-)
| * 2023-03-22(Alan O'Callaghan) Spec R deps for pkgdown |df73096| |
| | .github/workflows/pkgdown.yaml | 2 +-
| | 1 file changed, 1 insertion(+), 1 deletion(-)
| * 2023-03-22(Alan O'Callaghan) Bump another version |c5ef909| |
| | .github/workflows/pkgdown.yaml | 2 +-
| | 1 file changed, 1 insertion(+), 1 deletion(-)
| * 2023-03-22(Alan O'Callaghan) Bump GHA versions |1d8713a| |
| | .github/workflows/check-release.yaml | 6 +++---
| | .github/workflows/check-standard.yaml | 8 ++++----
| | .github/workflows/lint.yaml | 4 ++--
| | .github/workflows/pkgdown.yaml | 4 ++--
| | .github/workflows/test-coverage.yaml | 4 ++--
| | 5 files changed, 13 insertions(+), 13 deletions(-)
| * 2023-03-22(Alan O'Callaghan) Merge branch 'master' of github.com:talgalili/heatmaply |95f9ac4
| |\
| * | 2023-03-22(Alan O'Callaghan) Fix behaviour when limits don't contain the data range |b8e1219| | |
| | | DESCRIPTION | 4 ++--
| | | NEWS | 8 ++++++++
| | | R/heatmaply.R | 39 +++++++++++++++++++++------------------
| | | R/plots.R | 34 +++++++++++++---------------------
| | | 4 files changed, 44 insertions(+), 41 deletions(-)
* | | 2023-07-11(Alan O'Callaghan) #292 |17dfbac
| |/
|/| | |
| | DESCRIPTION | 4 ++--
| | NEWS | 6 ++++++
| | R/heatmapr.R | 15 +++++++++++----
| | 3 files changed, 19 insertions(+), 6 deletions(-)
* | 2023-01-06(Alan O'Callaghan) Correct date |73bfa04| |
| | DESCRIPTION | 2 +-
| | NEWS | 2 +-
| | 2 files changed, 2 insertions(+), 2 deletions(-)
* | 2023-01-06(Alan O'Callaghan) Resolve issue flagged in #266 |f663ea6
|/ |
| DESCRIPTION | 4 ++--
| NEWS | 7 ++++++-
| R/plots.R | 5 ++---
| 3 files changed, 10 insertions(+), 6 deletions(-)
* 2022-11-12(Tal Galili) add props |a978eb6|
| NEWS | 2 +-
| 1 file changed, 1 insertion(+), 1 deletion(-)
* 2022-11-12(Tal Galili) Fix "keep annotation names without adding dots" issue #281 |133d2df|
| DESCRIPTION | 4 ++--
| NEWS | 8 ++++++++
| R/heatmaply.R | 4 ++--
| 3 files changed, 12 insertions(+), 4 deletions(-)
* 2022-10-08(Tal Galili) trying another url that CRAN might like. |4a6b920|
| vignettes/heatmaply.Rmd | 2 +-
| 1 file changed, 1 insertion(+), 1 deletion(-)
* 2022-10-08(Tal Galili) simplify github action using the latest usethis package (2.1.6) |8015d41|
| .github/workflows/R-CMD-check.yaml | 111 +++++++----------------------------
| .github/workflows/pr-commands.yaml | 28 +++++----
| 2 files changed, 38 insertions(+), 101 deletions(-)
* 2022-10-08(Tal Galili) Fix for CRAN release: 1. bad url 2. unneeded text in NEWS |bb80cd7|
| NEWS | 56 -----------------------------------------------
| NEWS.md | 56 -----------------------------------------------
| README.md | 2 +-
| vignettes/heatmaply.Rmd | 2 +-
| 4 files changed, 2 insertions(+), 114 deletions(-)
* 2022-10-08(Tal Galili) attempt to fix missing curl package for windows run |bf1015d|
| .github/workflows/R-CMD-check.yaml | 1 +
| 1 file changed, 1 insertion(+)
* 2022-10-08(Tal Galili) update homepage re-roder banners in README |d888d8d|
| README.md | 8 ++++----
| docs/index.html | 6 +++---
| 2 files changed, 7 insertions(+), 7 deletions(-)
* 2022-10-08(Tal Galili) Update README.md (and misc .Rd updates) |260c186|
| README.md | 10 ++---
| man/RColorBrewer_colors.Rd | 19 +++++----
| man/heatmaply.Rd | 98 ++++++++++++++++++++++++++------------------
| man/heatmapr.Rd | 4 +-
| man/is.na10.Rd | 19 +++++----
| man/normalize.Rd | 3 +-
| man/percentize.Rd | 3 +-
| 7 files changed, 89 insertions(+), 67 deletions(-)
* 2022-10-08(Tal Galili) Add details to the new bug fix. |7f10968|
| NEWS | 8 +++++++-
| NEWS.md | 8 +++++++-
| 2 files changed, 14 insertions(+), 2 deletions(-)
* 2022-10-08(Tal Galili) Refresh DESCRIPTION and NEWS docs before release |5d2fad4|
| ChangeLog | 160 +++++++++++++++++++++++++++++++
| DESCRIPTION | 4 +-
| NEWS | 12 +--
| NEWS.md | 13 ++-
| docs/404.html | 117 +++++++----------------
| docs/CONDUCT.html | 109 ++++-----------------
| docs/authors.html | 164 ++++++++++----------------------
| docs/index.html | 265 ++++++++++++++++++++++++++--------------------------
| 8 files changed, 416 insertions(+), 428 deletions(-)
* 2022-10-08(Tal Galili) Merge pull request #279 from talgalili/cellnote-hoverinfo |8d5dc75
|\
| * 2022-10-03(Alan O'Callaghan) Add k_col/row tests |fcc35c7| |
| | tests/testthat/test_heatmapr.R | 10 ++++++++++
| | 1 file changed, 10 insertions(+)
| * 2022-09-27(Alan O'Callaghan) Restyle |83d0b86| |
| | R/RColorBrewer.R | 28 +++---
| | R/ggheatmap.R | 16 +--
| | R/heatmaply.R | 168 ++++++++++++++++---------------
| | R/heatmapr.R | 26 ++---
| | R/is.na10.R | 21 ++--
| | R/percentize.R | 6 +-
| | R/plots.R | 64 ++++++------
| | R/zzz.R | 1 -
| | tests/testthat/test_heatmaply.R | 38 ++++---
| | tests/testthat/test_heatmaply_misc.R | 25 +++--
| | tests/testthat/test_heatmapr.R | 1 -
| | 11 files changed, 211 insertions(+), 183 deletions(-)
| * 2022-09-21(Alan O'Callaghan) Change order of side_color labels |fd93a09| |
| | R/plots.R | 6 +++---
| | 1 file changed, 3 insertions(+), 3 deletions(-)
| * 2022-09-21(Alan O'Callaghan) redock |7be324a| |
| | man/heatmaply.Rd | 2 +-
| | man/heatmapr.Rd | 2 +-
| | 2 files changed, 2 insertions(+), 2 deletions(-)
| * 2022-09-21(Alan O'Callaghan) Tests and cov |ba6a2b2| |
| | R/heatmaply.R | 2 +-
| | R/heatmapr.R | 16 +---------------
| | R/plots.R | 17 ++++++++++-------
| | tests/testthat/test_heatmaply_misc.R | 18 ++++++++++++++++++
| | 4 files changed, 30 insertions(+), 23 deletions(-)
| * 2022-09-21(Alan O'Callaghan) Merge branch 'master' of github.com:talgalili/heatmaply into cellnote-hoverinfo |bbf6d80
| |\
| |/
|/|
* | 2022-08-06(Tal Galili) updating badges |eb1d709| |
| | README.md | 8 +++++++-
| | 1 file changed, 7 insertions(+), 1 deletion(-)
* | 2022-08-06(Tal Galili) fix release dates |78baffc| |
| | DESCRIPTION | 4 ++--
| | NEWS | 2 +-
| | 2 files changed, 3 insertions(+), 3 deletions(-)
* | 2022-08-06(Tal Galili) added github actions |79e0a8a| |
| | .github/.gitignore | 1 +
| | .github/workflows/check-release.yaml | 40 +++++++++++++++++
| | .github/workflows/check-standard.yaml | 58 ++++++++++++++++++++++++
| | .github/workflows/lint.yaml | 29 ++++++++++++
| | .github/workflows/pkgdown.yaml | 35 +++++++++++++++
| | .github/workflows/pr-commands.yaml | 75 +++++++++++++++++++++++++++++++
| | .github/workflows/test-coverage.yaml | 30 +++++++++++++
| | NEWS | 6 +++
| | 8 files changed, 274 insertions(+)
| * 2022-09-21(Alan O'Callaghan) Redock |91a2f1f| |
| | DESCRIPTION | 2 +-
| | R/plots.R | 2 +-
| | man/heatmaply.Rd | 40 ++++++++++++++++++++--------------------
| | man/heatmapr.Rd | 28 ++++++++++++++--------------
| | 4 files changed, 36 insertions(+), 36 deletions(-)
| * 2022-09-21(Alan O'Callaghan) Add label_format_fun to plotly |ad2009d| |
| | NEWS | 1 +
| | R/heatmaply.R | 3 ++-
| | R/plots.R | 11 ++++++++---
| | 3 files changed, 11 insertions(+), 4 deletions(-)
| * 2022-09-20(Alan O'Callaghan) Hoverinfo bodge for cellnote; resolve #76 |4b2c592
|/ |
| DESCRIPTION | 4 +--
| NEWS | 5 ++++
| R/heatmaply.R | 84 +++++++++++++++++++++++++++++--------------------------
| R/heatmapr.R | 54 +++++++++++++++++------------------
| 4 files changed, 79 insertions(+), 68 deletions(-)
* 2021-10-09(Tal Galili) date update |cbe478a|
| DESCRIPTION | 2 +-
| NEWS | 3 ++-
| 2 files changed, 3 insertions(+), 2 deletions(-)
* 2021-10-09(Tal Galili) Fix (removing) forbiden url (due to file size exceeding 20mb) |985ce92|
| README.md | 6 +++---
| docs/index.html | 10 +++++-----
| 2 files changed, 8 insertions(+), 8 deletions(-)
* 2021-10-09(Tal Galili) Fix: " 'LazyData' is specified without a 'data' directory" |3ef8564|
| DESCRIPTION | 1 -
| 1 file changed, 1 deletion(-)
* 2021-10-09(Tal Galili) Refresh pkgdown website with recent fixes |9ececff|
| docs/articles/heatmaply.html | 54 ++++++++++++++++++++---------------------
| docs/index.html | 18 +++++++-------
| docs/news/index.html | 2 +-
| docs/pkgdown.yml | 2 +-
| docs/reference/ggheatmap.html | 8 +++---
| 5 files changed, 42 insertions(+), 42 deletions(-)
* 2021-10-09(Tal Galili) Fix URL move in README.md |8f66adc|
| README.md | 18 +++++++++---------
| 1 file changed, 9 insertions(+), 9 deletions(-)
* 2021-10-09(Tal Galili) Fix hide_colorbar documentation: |a8987bf|
| R/ggheatmap.R | 22 +++++++++++-----------
| man/ggheatmap.Rd | 6 +++---
| 2 files changed, 14 insertions(+), 14 deletions(-)
* 2021-10-08(Tal Galili) Bump to 1.3.0 (and fix the various NEWS files) |d36128f|
| ChangeLog | 187 +
| DESCRIPTION | 5 +-
| NEWS | 18 +-
| NEWS.md | 36 +-
| R/zzz.R | 2 +
| docs/404.html | 8 +-
| docs/CONDUCT.html | 8 +-
| docs/articles/heatmaply.html | 623 +-
| .../accessible-code-block-0.0.1/empty-anchor.js | 15 +
| .../crosstalk-1.1.1/css/crosstalk.css | 27 +
| .../crosstalk-1.1.1/js/crosstalk.js | 1474 +++
| .../crosstalk-1.1.1/js/crosstalk.js.map | 37 +
| .../crosstalk-1.1.1/js/crosstalk.min.js | 2 +
| .../crosstalk-1.1.1/js/crosstalk.min.js.map | 1 +
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| .../htmlwidgets-1.5.3/htmlwidgets.js | 903 ++
| .../jquery-3.5.1/jquery-AUTHORS.txt | 357 +
| .../heatmaply_files/jquery-3.5.1/jquery.js | 10872 ++++++++++++++++++
| .../heatmaply_files/jquery-3.5.1/jquery.min.js | 2 +
| .../heatmaply_files/jquery-3.5.1/jquery.min.map | 1 +
| .../plotly-binding-4.9.3/plotly.js | 935 ++
| .../plotly-htmlwidgets.css | 9 +
| .../plotly-main-1.57.1/plotly-latest.min.js | 61 +
| docs/articles/index.html | 8 +-
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| docs/index.html | 52 +-
| docs/news/index.html | 93 +-
| docs/pkgdown.css | 4 +-
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| docs/reference/ggheatmap-1.png | Bin 126400 -> 131761 bytes
| docs/reference/ggheatmap.html | 24 +-
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| docs/reference/normalize.html | 41 +-
| docs/reference/percentize.html | 33 +-
| 45 files changed, 15826 insertions(+), 833 deletions(-)
* 2021-10-07(Alan O'Callaghan) Bump and document version |86cb219|
| DESCRIPTION | 6 +++---
| NEWS.md | 8 ++++++++
| man/ggheatmap.Rd | 11 ++++++++++-
| 3 files changed, 21 insertions(+), 4 deletions(-)
* 2021-10-07(Alan O'Callaghan) Merge branch 'jaehyunjoo-master' |274ae60
|\
| * 2021-10-07(Jaehyun Joo) Better widths default when row_dend_left = TRUE. |5e98482| |
| | R/ggheatmap.R | 6 +++++-
| | 1 file changed, 5 insertions(+), 1 deletion(-)
| * 2021-10-07(Jaehyun Joo) Add hide_colorbar option to the ggheatmap function. |686c20b
|/ |
| R/ggheatmap.R | 15 ++++++++++++---
| 1 file changed, 12 insertions(+), 3 deletions(-)
* 2021-08-04(Alan O'Callaghan) Change order of hovertext when plot_method=plotly |4a127cb|
| DESCRIPTION | 4 ++--
| NEWS | 5 +++++
| R/plots.R | 19 ++++++++++++-------
| 3 files changed, 19 insertions(+), 9 deletions(-)
* 2021-08-04(Alan O'Callaghan) Merge branch 'master' of github.com:talgalili/heatmaply |28ef576
|\
| * 2021-07-02(Tal Galili) merging recent changes into 1.2.2 |8b0b38c| |
| | DESCRIPTION | 2 +-
| | NEWS | 5 ++---
| | 2 files changed, 3 insertions(+), 4 deletions(-)
| * 2021-07-01(Alan O'Callaghan) Resolve issue with point size matrix in heatmaply when plot_method=plotly |2eb5d9e| |
| | DESCRIPTION | 4 ++--
| | NEWS | 6 ++++++
| | R/plots.R | 9 +++++----
| | 3 files changed, 13 insertions(+), 6 deletions(-)
| * 2021-05-23(Tal Galili) update NEWS with new GA |b647afc| |
| | NEWS | 2 +-
| | 1 file changed, 1 insertion(+), 1 deletion(-)
| * 2021-05-23(Tal Galili) Merge branch 'master' of github.com:talgalili/heatmaply |2327fd9
| |\
| | * 2021-05-17(Alan O'Callaghan) Add GHA (#261) |2a75c62| | |
| | | .github/workflows/R-CMD-check.yaml | 115 +++++++++++++++++++++++++++++++
| | | 1 file changed, 115 insertions(+)
| * | 2021-05-23(Tal Galili) update startup message to include stackoverflow. |42286e0
| |/ | |
| | DESCRIPTION | 4 ++--
| | NEWS | 6 ++++++
| | R/zzz.R | 2 +-
| | 3 files changed, 9 insertions(+), 3 deletions(-)
| * 2021-02-02(Tal Galili) heatmaply wasn't printing properly in rmarkdown. Reverted back the new print method, and now it's working fine (but we get back the warning message from issue #226: https://github.com/talgalili/heatmaply/issues/226 ) |1aea560| |
| | DESCRIPTION | 4 ++--
| | NAMESPACE | 1 -
| | NEWS | 7 +++++++
| | R/heatmaply.R | 13 -------------
| | vignettes/heatmaply.Rmd | 5 ++++-
| | 5 files changed, 13 insertions(+), 17 deletions(-)
| * 2021-01-29(Tal Galili) fix * checking S3 generic/method consistency ... WARNING |c550716| |
| | R/heatmaply.R | 2 +-
| | 1 file changed, 1 insertion(+), 1 deletion(-)
| * 2021-01-29(Tal Galili) minr update to pkgdown |43bda9b| |
| | docs/articles/heatmaply.html | 56 ++++++++++++++++++++--------------------
| | docs/index.html | 2 +-
| | docs/pkgdown.yml | 2 +-
| | 3 files changed, 30 insertions(+), 30 deletions(-)
| * 2021-01-29(Tal Galili) Fix 'Unexported object imported by a ':::' call: 'htmlwidgets:::print.htmlwidget'' |ffaf9cc| |
| | R/heatmaply.R | 2 +-
| | README.md | 2 +-
| | 2 files changed, 2 insertions(+), 2 deletions(-)
| * 2021-01-29(Tal Galili) update pkgdown |0b24e70| |
| | docs/404.html | 2 +-
| | docs/CONDUCT.html | 2 +-
| | docs/articles/heatmaply.html | 186 +++++++++++--------------
| | docs/articles/index.html | 2 +-
| | docs/authors.html | 2 +-
| | docs/index.html | 52 ++++---
| | docs/news/index.html | 119 ++++++++--------
| | docs/pkgdown.yml | 4 +-
| | docs/reference/RColorBrewer_colors.html | 2 +-
| | docs/reference/ggheatmap.html | 2 +-
| | docs/reference/ggplot_side_color_plot.html | 2 +-
| | docs/reference/heatmaply.html | 30 ++--
| | docs/reference/heatmapr.html | 4 +-
| | docs/reference/index.html | 2 +-
| | docs/reference/is.heatmapr.html | 2 +-
| | docs/reference/is.na10.html | 2 +-
| | docs/reference/is.plotly.html | 2 +-
| | docs/reference/normalize.html | 2 +-
| | docs/reference/percentize.html | 2 +-
| | 19 files changed, 211 insertions(+), 210 deletions(-)
| * 2021-01-29(Tal Galili) add ref to https://github.com/talgalili/heatmaply/issues/226 |407260c| |
| | R/heatmaply.R | 2 ++
| | 1 file changed, 2 insertions(+)
| * 2021-01-29(Tal Galili) fix issue #226 by creting print.heatmaply function to enable us to supresswarning. This is a hack, and may be referted in the future. |66514f0| |
| | DESCRIPTION | 2 +-
| | NAMESPACE | 1 +
| | NEWS | 3 +-
| | R/heatmaply.R | 98 +++++++++++++++++++++++++++++-----------------------
| | man/heatmaply.Rd | 28 +++++++--------
| | 5 files changed, 72 insertions(+), 60 deletions(-)
| * 2021-01-29(Tal Galili) vignette: eval=F for some examples (so to reduce file size) |adb4d4c| |
| | NEWS | 2 +-
| | vignettes/heatmaply.Rmd | 31 ++++++++++++++++++-------------
| | 2 files changed, 19 insertions(+), 14 deletions(-)
| * 2021-01-29(Tal Galili) - update date for version (1.1.2) - remove d3heatmap links from Rd files |9af5eb4| |
| | DESCRIPTION | 6 +++---
| | NEWS | 3 ++-
| | R/heatmapr.R | 2 +-
| | man/heatmapr.Rd | 2 +-
| | 4 files changed, 7 insertions(+), 6 deletions(-)
* | 2021-01-26(Alan O'Callaghan) Add GHA |9898ebc
|/ |
| .github/workflows/R-CMD-check.yaml | 115 +++++++++++++++++++++++++++++++++
| 1 file changed, 115 insertions(+)
* 2020-10-09(Tal Galili) Update NEWS/version to reflect two small fixes. |77e8f9f|
| DESCRIPTION | 4 ++--
| NEWS | 11 +++++++++++
| 2 files changed, 13 insertions(+), 2 deletions(-)
* 2020-10-09(Tal Galili) Merge pull request #254 from manor/patch-1 |d4bf770
|\
| * 2020-10-06(Manor Askenazi) Fix incorrect use of distfun_row and hclustfun_row |6ff305c| |
| | R/heatmapr.R | 2 +-
| | 1 file changed, 1 insertion(+), 1 deletion(-)
* | 2020-10-09(Tal Galili) Merge pull request #252 from evanbiederstedt/feature/d3heatmap_replace |b5fc000
|\ \
| |/
|/|
| * 2020-10-01(evanbiederstedt) README edits |384888a
|/ |
| README.md | 11 +++++++++++
| 1 file changed, 11 insertions(+)
* 2020-09-12(Tal Galili) Fix http to be https - so to keep the homepage secure. |3f9bcf8|
| README.md | 10 +++++-----
| docs/index.html | 6 +++---
| 2 files changed, 8 insertions(+), 8 deletions(-)
* 2020-08-24(Tal Galili) bump date |a19b721|
| DESCRIPTION | 2 +-
| NEWS | 2 +-
| 2 files changed, 2 insertions(+), 2 deletions(-)
* 2020-08-20(Tal Galili) Fix "Found the following (possibly) invalid URLs:" |3845262|
| ChangeLog | 93 ++++++-
| DESCRIPTION | 2 +-
| NEWS | 5 +-
| NEWS.md | 5 +-
| R/zzz.R | 2 +-
| docs/404.html | 9 +-
| docs/articles/heatmaply.html | 226 +++++++++--------
| .../figure-html/unnamed-chunk-21-1.png | Bin 50131 -> 34737 bytes
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| .../figure-html/unnamed-chunk-29-1.png | Bin 86294 -> 60607 bytes
| docs/articles/index.html | 9 +-
| docs/index.html | 2 +-
| docs/news/index.html | 227 ++++++++++++------
| docs/pkgdown.yml | 6 +-
| docs/reference/RColorBrewer_colors.html | 50 ++--
| docs/reference/ggheatmap-1.png | Bin 158702 -> 126400 bytes
| docs/reference/ggheatmap.html | 16 +-
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| docs/reference/heatmaply.html | 253 +++++++-------------
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| docs/reference/is.na10.html | 38 ++-
| docs/reference/is.plotly.html | 17 +-
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| docs/reference/percentize.html | 43 ++--
| vignettes/heatmaply.Rmd | 4 +-
| 27 files changed, 582 insertions(+), 544 deletions(-)
* 2020-08-19(Tal Galili) Remove "\link[d3heatmap]{d3heatmap}" from .Rd since d3heatmap was removed from CRAN |50540e1|
| DESCRIPTION | 2 +-
| NEWS | 1 +
| NEWS.md | 1 +
| R/heatmapr.R | 10 +++++-----
| man/heatmapr.Rd | 8 ++++----
| 5 files changed, 12 insertions(+), 10 deletions(-)
* 2020-08-19(Tal Galili) Combine all fixes, and prepare to release to CRAN |5ab5e8b|
| DESCRIPTION | 4 ++--
| NEWS | 21 ++++-------------
| NEWS.md | 10 +++++++++
| docs/CONDUCT.html | 9 +++++---
| docs/authors.html | 10 ++++++---
| docs/index.html | 65 +++++++++++++++++++++++++++++++----------------------
| 6 files changed, 67 insertions(+), 52 deletions(-)
* 2020-08-15(Alan O'Callaghan) Resolve #250 |49ab03e|
| DESCRIPTION | 6 +++---
| NEWS | 6 ++++++
| R/heatmaply.R | 11 +++++++----
| man/heatmaply.Rd | 21 ++++++++++-----------
| tests/testthat/test_heatmaply_misc.R | 5 ++++-
| 5 files changed, 30 insertions(+), 19 deletions(-)
* 2020-08-10(Alan O'Callaghan) Fix label handling for ggheatmap, resolve #248 |75821d3|
| DESCRIPTION | 4 ++--
| NEWS | 6 ++++++
| R/heatmaply.R | 3 ++-
| R/plots.R | 22 ++++++++++------------
| 4 files changed, 20 insertions(+), 15 deletions(-)
* 2020-07-15(Alan O'Callaghan) Resolve #246 |9556347|
| DESCRIPTION | 4 ++--
| NEWS | 5 +++++
| R/heatmaply.R | 21 ++++++++++-----------
| R/plots.R | 6 +++++-
| 4 files changed, 22 insertions(+), 14 deletions(-)
* 2020-05-26(Alan O'Callaghan) Merge branch 'master' of github.com:talgalili/heatmaply |920648c
|\
| * 2020-03-27(Tal Galili) minor fix to NEWS |9048892| |
| | NEWS | 1 -
| | NEWS.md | 2 +-
| | 2 files changed, 1 insertion(+), 2 deletions(-)
| * 2020-03-27(Tal Galili) fix version number, pkgdown, preparing for CRAN (version 1.1.0) |13e389c| |
| | ChangeLog | 93 +++++
| | DESCRIPTION | 4 +-
| | NEWS | 38 +-
| | NEWS.md | 21 +
| | docs/404.html | 34 +-
| | docs/CONDUCT.html | 34 +-
| | docs/articles/heatmaply.html | 558 ++++++++++++-------------
| | docs/articles/index.html | 35 +-
| | docs/authors.html | 34 +-
| | docs/bootstrap-toc.css | 60 +++
| | docs/bootstrap-toc.js | 159 +++++++
| | docs/index.html | 70 ++--
| | docs/news/index.html | 152 +++----
| | docs/pkgdown.css | 121 +++++-
| | docs/pkgdown.js | 5 -
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| | docs/reference/RColorBrewer_colors.html | 47 +--
| | docs/reference/ggheatmap.html | 43 +-
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| | docs/reference/heatmaply_iris.html | 2 +-
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| | docs/reference/is.plotly.html | 43 +-
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| | 28 files changed, 1187 insertions(+), 752 deletions(-)
* | 2020-05-26(Alan O'Callaghan) Resolve #241 |b856358
|/ |
| DESCRIPTION | 4 ++--
| NEWS | 7 ++++++
| R/heatmaply.R | 6 ++---
| R/plots.R | 65 +++++++++++++++++++++++++++++++++++++++++++++----------
| 4 files changed, 66 insertions(+), 16 deletions(-)
* 2020-02-29(Alan O'Callaghan) Bump description/news |53577d5|
| DESCRIPTION | 4 ++--
| NEWS | 6 ++++++
| 2 files changed, 8 insertions(+), 2 deletions(-)
* 2020-02-29(Huzefa Khalil) Fix for #231 (#232) |16890f5|
| R/plots.R | 74 +++++++++++++++++++++++++++++++------------------------------
| 1 file changed, 38 insertions(+), 36 deletions(-)
* 2020-02-15(Alan O'Callaghan) Merge branch 'master' of github.com:talgalili/heatmaply |ded426c
|\
| * 2020-02-13(Alan O'Callaghan) Correct version and add colorbar_thickness arg |4076c69| |
| | DESCRIPTION | 2 +-
| | NEWS | 13 +++++++++++++
| | NEWS.md | 7 -------
| | R/heatmaply.R | 55 ++++++++++++++++++++++++++--------------------------
| | R/plots.R | 18 +++++++++++++----
| | man/heatmaply.Rd | 5 +++++
| | 6 files changed, 61 insertions(+), 39 deletions(-)
| * 2020-02-13(Alan O'Callaghan) Wrong semver |b8e3c9c| |
| | DESCRIPTION | 2 +-
| | 1 file changed, 1 insertion(+), 1 deletion(-)
* | 2020-02-15(Alan O'Callaghan) Revert "Resolve #229" |aefcb44
|/ |
| DESCRIPTION | 4 ++--
| NEWS | 19 +++++++++++++++++++
| NEWS.md | 7 -------
| R/plots.R | 2 --
| 4 files changed, 21 insertions(+), 11 deletions(-)
* 2020-02-13(Alan O'Callaghan) Resolve #229 |e84da51|
| DESCRIPTION | 4 ++--
| NEWS.md | 7 +++++++
| R/plots.R | 2 ++
| 3 files changed, 11 insertions(+), 2 deletions(-)
* 2020-01-06(Alan O'Callaghan) Docs |57abdb8|
| DESCRIPTION | 2 +-
| man/heatmaply.Rd | 11 ++++++++---
| 2 files changed, 9 insertions(+), 4 deletions(-)
* 2020-01-06(Alan O'Callaghan) Wrong semver |4073b08|
| DESCRIPTION | 2 +-
| NEWS | 2 +-
| 2 files changed, 2 insertions(+), 2 deletions(-)
* 2020-01-06(Alan O'Callaghan) add dendrogram_layers argument |1299fd2|
| DESCRIPTION | 4 ++--
| NEWS | 10 ++++++++++
| R/heatmaply.R | 18 ++++++++++++------
| 3 files changed, 24 insertions(+), 8 deletions(-)
* 2019-12-07(Tal Galili) Update issue templates |3a626ad|
| .github/ISSUE_TEMPLATE/bug_report.md | 10 +++++-----
| .github/ISSUE_TEMPLATE/feature_request.md | 8 ++++----
| 2 files changed, 9 insertions(+), 9 deletions(-)
* 2019-12-06(Tal Galili) Improve the README with link to stackoverflow. |6ea9c1e|
| DESCRIPTION | 4 ++--
| NEWS | 7 +++++++
| R/zzz.R | 1 +
| README.md | 7 ++++---
| docs/CONDUCT.html | 2 +-
| docs/authors.html | 2 +-
| docs/index.html | 10 ++++++----
| 7 files changed, 22 insertions(+), 11 deletions(-)
* 2019-12-05(Tal Galili) Fix wrong url (again...) |f4e9a8a|
| DESCRIPTION | 2 +-
| NEWS | 2 +-
| NEWS.md | 2 +-
| docs/articles/heatmaply.html | 78 ++++++++++++++++++------------------
| docs/news/index.html | 6 +--
| docs/reference/heatmaply.html | 2 +-
| docs/reference/heatmaply_iris.html | 2 +-
| vignettes/heatmaply.Rmd | 2 +-
| 8 files changed, 48 insertions(+), 48 deletions(-)
* 2019-12-03(Tal Galili) Fixed a few canonical URL issues in the vignette |1b0e356|
| ChangeLog | 51 +++++++++++++++++++++
| DESCRIPTION | 2 +-
| NEWS | 3 +-
| NEWS.md | 3 +-
| README.md | 2 +-
| docs/articles/heatmaply.html | 86 ++++++++++++++++++------------------
| docs/index.html | 2 +-
| docs/news/index.html | 7 +--
| docs/reference/heatmaply_iris.html | 2 +-
| vignettes/heatmaply.Rmd | 12 ++---
| 10 files changed, 112 insertions(+), 58 deletions(-)
* 2019-11-23(Tal Galili) Update docs before release to CRAN |69b42ae|
| ChangeLog | 115 +++
| DESCRIPTION | 6 +-
| NEWS | 10 +-
| NEWS.md | 21 +-
| R/zzz.R | 1 +
| README.md | 2 +-
| docs/404.html | 138 +++
| docs/CONDUCT.html | 20 +-
| docs/articles/heatmaply.html | 653 +++++++++-----
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| .../htmlwidgets-1.5.1}/htmlwidgets.js | 74 +-
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| docs/news/index.html | 99 ++-
| docs/pkgdown.css | 46 +-
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| docs/pkgdown.yml | 2 +-
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| docs/reference/ggplot_side_color_plot.html | 33 +-
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* 2019-11-01(Alan O'Callaghan) Add more examples to vignette! (#224) |d40d361|
| vignettes/heatmaply.Rmd | 66 +++++++++++++++++++++++++++++++++++++++++++++--
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* 2019-10-15(Alan O'Callaghan) Add ggheatmap, improve vignette for V1.0.0. (#220) |08a9b19|
| DESCRIPTION | 4 +-
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| vignettes/heatmaply.Rmd | 523 +++++++++++++++++++++------------
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* 2019-09-27(Tal Galili) Update issue templates 2 |2a6c548|
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* 2019-09-27(Tal Galili) Update issue templates |e2548ad|
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* 2019-09-02(Alan O'Callaghan) Add create_dend test |0935a08|
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| tests/testthat/test_heatmapr.R | 8 ++++++++
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* 2019-08-19(Alan O'Callaghan) pkgdown rule |26dcecb|
| Makefile | 3 +++
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* 2019-08-19(Alan O'Callaghan) Resolve #44 |3eefa56|
| R/heatmapr.R | 62 +++++++++++++---------------------
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* 2019-08-19(Alan O'Callaghan) Resolve #182 |0372ae3|
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| vignettes/heatmaply.Rmd | 9 ++++++++-
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* 2019-08-19(Alan O'Callaghan) Add hclust_method=NA functionality. Resolve #58 |a193b75|
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* 2019-08-19(Alan O'Callaghan) cellnote and grid_gap fixes |4df91c2|
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* 2019-08-02(Alan O'Callaghan) show_dendrogram argument (#215) |b66df95|
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* 2019-07-19(Alan O'Callaghan) Merge branch 'master' of github.com:talgalili/heatmaply |a352dff
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| * 2019-07-19(Tal Galili) attempt to have heatmaply show in the examples of pkgdown (didn't work, sadly. But still this version is better..) |8b81673| |
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* | 2019-07-19(Alan O'Callaghan) Add default val |240f1a4
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* 2019-07-18(Alan O'Callaghan) fontsize_row/col applies to side colours too |18502a1|
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* 2019-07-18(Alan O'Callaghan) Remove unused ticklabel arg |88e3ca6|
| R/heatmaply.R | 3 +--
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* 2019-07-17(Tal Galili) add ignores to pass CRAN |6fecb8f|
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| .../jquery-1.11.3/jquery-AUTHORS.txt | 217 +
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